Gm16527 Gene Detail

Summary

• Symbol
  Gm16527
• Name
  predicted gene, 16527

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:4361133
  NCBI Gene: 669780
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:59733170-59754238 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 29.07 cM

Strain
Comparison

• SNPs within 2kb
  728 from dbSNP Build 142
• Strain Annotations
  20

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4361133	protein coding gene	Chr3:59685215-59754238 (+)
129S1/SvImJ	ENSMUSG00200023766	pseudogene	Chr3:56558529-56620354 (+)
A/J	ENSMUSG00195032574	pseudogene	Chr3:56479622-56548539 (+)
AKR/J	ENSMUSG00220030746	pseudogene	Chr3:56589384-56658329 (-)
BALB/cJ	ENSMUSG00180027601	pseudogene	Chr3:56553602-56615424 (+)
C3H/HeJ	ENSMUSG00175008884	pseudogene	Chr3:56394895-56456724 (+)
C57BL/6NJ	ENSMUSG00215009235	pseudogene	Chr3:56866623-56935642 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036966	pseudogene	Chr3:53065312-53162527 (+)
CAST/EiJ	ENSTCUG00005002508	pseudogene	Chr3:56152432-56221451 (+)
CBA/J	ENSMUSG00210003915	pseudogene	Chr3:56510569-56572393 (+)
DBA/2J	ENSMUSG00185028531	pseudogene	Chr3:56690112-56759131 (+)
FVB/NJ	ENSMUSG00205004044	pseudogene	Chr3:55673364-55735202 (+)
JF1/MsJ	ENSUMUG00000003874	pseudogene	Chr3:56083633-56145127 (+)
JF1/MsJ	ENSUMUG00000003891	pseudogene	Chr3:56402149-56463234 (+)
LP/J	ENSMUSG00230004619	pseudogene	Chr3:58690528-58752346 (+)
NOD/ShiLtJ	ENSMUSG00190033154	pseudogene	Chr3:56880471-56949412 (+)
NZO/HlLtJ	ENSMUSG00225002241	pseudogene	Chr3:61312676-61381676 (+)
PWK/PhJ	ENSLUMG00010005503	pseudogene	Chr3:56220095-56282869 (+)
SPRET/EiJ	ENSMSPG00010007731	pseudogene	Chr3:56975287-57036003 (+)
WSB/EiJ	ENSIUOG00005009284	pseudogene	Chr3:56654990-56717732 (+)

Homology

• Gene Tree
  Gm16527
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Gm16527
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  4

• Ensembl
  ENSMUSG00000074589 (Evidence)
• NCBI Gene
  669780

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000074589	Ensembl Gene Model | MGI Sequence Detail	21069	C57BL/6J
transcript	ENSMUST00000192453	Ensembl | MGI Sequence Detail	1200	Not Applicable
polypeptide	NP_001357795	RefSeq | MGI Sequence Detail	430	C57BL/6

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 7

  Diseases 1

  Phenotypes 2
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Gm16527:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr29239	Chr3:59733132-59733143 (+)	-32 bp