Gm16364 Gene Detail

Summary

• Symbol
  Gm16364
• Name
  predicted gene 16364
• Synonyms
  Gm16365, Hilnc

• Feature Type
  lncRNA gene
• IDs
  MGI:3840142
  NCBI Gene: 100504626
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:39432067-39489678 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 20.78 cM

Strain
Comparison

• SNPs within 2kb
  304 from dbSNP Build 142
• Strain Annotations
  35

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3840142	lncRNA gene	Chr10:39432067-39489678 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0002847	antisense lncRNA gene	Chr10:38069246-38071229 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0002848	antisense lncRNA gene	Chr10:38071663-38131326 (-)
A/J	MGP_AJ_G0002825	antisense lncRNA gene	Chr10:37057671-37113009 (-)
A/J	MGP_AJ_G0002824	antisense lncRNA gene	Chr10:37055246-37057237 (-)
AKR/J	MGP_AKRJ_G0002805	antisense lncRNA gene	Chr10:37570909-37626977 (-)
AKR/J	MGP_AKRJ_G0002804	antisense lncRNA gene	Chr10:37568431-37570475 (-)
BALB/cJ	MGP_BALBcJ_G0002811	antisense lncRNA gene	Chr10:37098851-37101087 (-)
BALB/cJ	MGP_BALBcJ_G0002812	antisense lncRNA gene	Chr10:37101521-37156879 (-)
C3H/HeJ	MGP_C3HHeJ_G0002768	antisense lncRNA gene	Chr10:37892161-37895385 (-)
C3H/HeJ	MGP_C3HHeJ_G0002769	antisense lncRNA gene	Chr10:37895819-37953691 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0002953	antisense lncRNA gene	Chr10:39231944-39235081 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0002954	antisense lncRNA gene	Chr10:39235515-39297455 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002498	antisense lncRNA gene	Chr10:35043689-35045723 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002499	antisense lncRNA gene	Chr10:35046155-35100999 (-)
CAST/EiJ	MGP_CASTEiJ_G0002740	antisense lncRNA gene	Chr10:38048445-38050421 (-)
CAST/EiJ	MGP_CASTEiJ_G0002741	antisense lncRNA gene	Chr10:38050855-38109282 (-)
CBA/J	MGP_CBAJ_G0002763	antisense lncRNA gene	Chr10:41047458-41052171 (-)
CBA/J	MGP_CBAJ_G0002764	antisense lncRNA gene	Chr10:41052605-41115706 (-)
DBA/2J	MGP_DBA2J_G0002770	antisense lncRNA gene	Chr10:36574991-36577035 (-)
DBA/2J	MGP_DBA2J_G0002771	antisense lncRNA gene	Chr10:36577469-36633629 (-)
FVB/NJ	MGP_FVBNJ_G0002790	antisense lncRNA gene	Chr10:36080371-36083849 (-)
FVB/NJ	MGP_FVBNJ_G0002791	antisense lncRNA gene	Chr10:36084283-36138915 (-)
LP/J	MGP_LPJ_G0002846	antisense lncRNA gene	Chr10:38034836-38036855 (-)
LP/J	MGP_LPJ_G0002847	antisense lncRNA gene	Chr10:38037289-38098947 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002781	antisense lncRNA gene	Chr10:41906194-41963370 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002780	antisense lncRNA gene	Chr10:41903784-41905760 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002957	antisense lncRNA gene	Chr10:37555621-37558569 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002958	antisense lncRNA gene	Chr10:37559003-37617825 (-)
PWK/PhJ	MGP_PWKPhJ_G0002698	antisense lncRNA gene	Chr10:36414586-36416610 (-)
PWK/PhJ	MGP_PWKPhJ_G0002699	antisense lncRNA gene	Chr10:36417046-36474220 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0002649	antisense lncRNA gene	Chr10:37341151-37399073 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0002648	antisense lncRNA gene	Chr10:37338680-37340716 (-)
WSB/EiJ	MGP_WSBEiJ_G0002769	antisense lncRNA gene	Chr10:37831297-37833663 (-)
WSB/EiJ	MGP_WSBEiJ_G0002770	antisense lncRNA gene	Chr10:37834097-37892829 (-)

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotypes from 2 alleles in 1 genetic background
  10 phenotype references
  

• All Mutations and Alleles
  10
• Chemically induced (other)
  1
• Endonuclease-mediated
  2
• Gene trapped
  4
• Radiation induced
  1
• Targeted
  2
• Genomic Mutations
  2 involving Gm16364
• Find Mice (IMSR)
  1 strains or lines available

Mice homozygous for a null allele exhibit decreased high-fat diet induced obesity and hepatic steatosis associated with decreased lipogenesis.

Gene Ontology
(GO)
Classifications

Expression

• cDNA Data
  1

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  52
• RefSeq
  2

• Ensembl
  ENSMUSG00000086915 (Evidence), ENSMUSG00000087014 (Evidence)
• NCBI Gene
  100504626

Representative Sequences			Length	Strain/Species
genomic	100504626	NCBI Gene Model | MGI Sequence Detail	57612	C57BL/6J
transcript	NR_152259	RefSeq | MGI Sequence Detail	2133	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:3840143

References

• Summaries
  All 20

  Phenotypes 10
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:322340 Jiang Y, et al., Loss of Hilnc prevents diet-induced hepatic steatosis through binding of IGF2BP2. Nat Metab. 2021 Nov;3(11):1569-1584

TSS for Gm16364:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr97335	Chr10:39489631-39489682 (-)	21 bp