Gm16348 Gene Detail

Summary

• Symbol
  Gm16348
• Name
  predicted gene 16348

• Feature Type
  lncRNA gene
• IDs
  MGI:3840113
  NCBI Gene: 102640962
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr8:41671173-41673931 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 23.89 cM

Strain
Comparison

• SNPs within 2kb
  223 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3840113	lncRNA gene	Chr8:41671173-41673931 (+)
129S1/SvImJ	ENSMUSG00200007740	lncRNA gene	Chr8:36729453-36732158 (+)
A/J	ENSMUSG00195006111	lncRNA gene	Chr8:37221626-37224331 (+)
AKR/J	ENSMUSG00220006397	lncRNA gene	Chr8:37026546-37029250 (+)
BALB/cJ	ENSMUSG00180003298	lncRNA gene	Chr8:36766383-36769086 (+)
C3H/HeJ	ENSMUSG00175015094	lncRNA gene	Chr8:36944349-36947052 (+)
C57BL/6NJ	ENSMUSG00215009470	lncRNA gene	Chr8:36743567-36746322 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013834	unclassified non-coding RNA gene	Chr8:35185333-35188040 (+)
CAST/EiJ	ENSTCUG00005005829	lncRNA gene	Chr8:36854170-36856886 (+)
CBA/J	ENSMUSG00210012801	lncRNA gene	Chr8:36784536-36787239 (+)
DBA/2J	ENSMUSG00185006056	lncRNA gene	Chr8:42685078-42687781 (+)
FVB/NJ	ENSMUSG00205002409	lncRNA gene	Chr8:35939749-35942450 (+)
JF1/MsJ	ENSUMUG00000015819	lncRNA gene	Chr8:44404481-44407244 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190015905	lncRNA gene	Chr8:36805326-36808033 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010013226	lncRNA gene	Chr8:36634495-36637239 (+)
SPRET/EiJ	ENSMSPG00010004546	lncRNA gene	Chr8:37483020-37485742 (+)
WSB/EiJ	ENSIUOG00005005662	lncRNA gene	Chr8:37669897-37672602 (+)

Homology

• Gene Tree
  Gm16348
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  2

• Ensembl
  ENSMUSG00000085445 (Evidence)
• NCBI Gene
  102640962

Representative Sequences			Length	Strain/Species
genomic	102640962	NCBI Gene Model | MGI Sequence Detail	2759	C57BL/6J
transcript	NR_166596	RefSeq | MGI Sequence Detail	1362	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 9

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm16348:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr77088	Chr8:41671126-41671136 (+)	-42 bp
Tssr77089	Chr8:41671157-41671202 (+)	7 bp
Tssr77090	Chr8:41671413-41671426 (+)	247 bp