Mir1945 Gene Detail

Summary

• Symbol
  Mir1945
• Name
  microRNA 1945
• Synonyms
  mmu-mir-1945

• Feature Type
  miRNA gene
• IDs
  MGI:3836984
  NCBI Gene: 100316833
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:11072232-11072309 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 6.40 cM

Strain
Comparison

• SNPs within 2kb
  53 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3836984	miRNA gene	Chr16:11072232-11072309 (-)
129S1/SvImJ	ENSMUSG00200012068	miRNA gene	Chr16:8078163-8078240 (-)
A/J	ENSMUSG00195011961	miRNA gene	Chr16:7616203-7616280 (-)
AKR/J	ENSMUSG00220017544	miRNA gene	Chr16:7905005-7905082 (-)
BALB/cJ	ENSMUSG00180009159	miRNA gene	Chr16:7855408-7855485 (-)
C3H/HeJ	ENSMUSG00175031178	miRNA gene	Chr16:8045142-8045219 (-)
C57BL/6NJ	ENSMUSG00215021670	miRNA gene	Chr16:7722068-7722145 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0007478	miRNA gene	Chr16:7832461-7832538 (-)
CAST/EiJ	ENSTCUG00005032840	miRNA gene	Chr16:7977689-7977766 (-)
CBA/J	ENSMUSG00210012262	miRNA gene	Chr16:8062306-8062383 (-)
DBA/2J	ENSMUSG00185010756	miRNA gene	Chr16:8007629-8007706 (-)
FVB/NJ	ENSMUSG00205014429	miRNA gene	Chr16:7925439-7925516 (-)
JF1/MsJ	ENSUMUG00000039959	miRNA gene	Chr16:8134362-8134439 (-)
LP/J	ENSMUSG00230046336	miRNA gene	Chr16:10573910-10573987 (-)
NOD/ShiLtJ	ENSMUSG00190027989	miRNA gene	Chr16:8107583-8107660 (-)
NZO/HlLtJ	ENSMUSG00225032351	miRNA gene	Chr16:13791884-13791961 (-)
PWK/PhJ	ENSLUMG00010017901	miRNA gene	Chr16:7994395-7994472 (-)
SPRET/EiJ	ENSMSPG00010018388	miRNA gene	Chr16:7947916-7947993 (-)
WSB/EiJ	ENSIUOG00005017014	miRNA gene	Chr16:8071643-8071720 (-)

Homology

• Gene Tree
  Mir1945
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000088544 (Evidence)
• NCBI Gene
  100316833

Representative Sequences			Length	Strain/Species
genomic	100316833	NCBI Gene Model | MGI Sequence Detail	78	C57BL/6J
transcript	NR_035466	RefSeq | MGI Sequence Detail	78	ZRU/MplStud

Other Database
Links

miRBase

MI0009934

References

• Summaries
  All 6

  Phenotypes 1
• Earliest
  J:105741 Griffiths-Jones S, et al., miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4
• Latest
  J:174268 Prosser HM, et al., A resource of vectors and ES cells for targeted deletion of microRNAs in mice. Nat Biotechnol. 2011 Aug 7;29(9):840-5

TSS for Mir1945:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr140020	Chr16:11072296-11072312 (-)	5 bp