Gm16278 Gene Detail

Summary

• Symbol
  Gm16278
• Name
  predicted gene 16278

• Feature Type
  lncRNA gene
• IDs
  MGI:3826602
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:26138063-26154719 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 13.01 cM

Strain
Comparison

• SNPs within 2kb
  47 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3826602	lncRNA gene	Chr17:26138063-26154719 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015343	unclassified non-coding RNA gene	Chr17:25029506-25048524 (+)
A/J	MGP_AJ_G0015318	unclassified non-coding RNA gene	Chr17:24291736-24310002 (+)
AKR/J	MGP_AKRJ_G0015281	unclassified non-coding RNA gene	Chr17:24405362-24421644 (+)
BALB/cJ	MGP_BALBcJ_G0015281	unclassified non-coding RNA gene	Chr17:24521733-24541117 (+)
C3H/HeJ	MGP_C3HHeJ_G0015105	unclassified non-coding RNA gene	Chr17:24785309-24803940 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015735	unclassified non-coding RNA gene	Chr17:26084660-26102353 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013476	unclassified non-coding RNA gene	Chr17:21757030-21773444 (+)
CAST/EiJ	MGP_CASTEiJ_G0014656	unclassified non-coding RNA gene	Chr17:24680593-24698288 (+)
CBA/J	MGP_CBAJ_G0015084	unclassified non-coding RNA gene	Chr17:27002656-27027592 (+)
DBA/2J	MGP_DBA2J_G0015179	unclassified non-coding RNA gene	Chr17:23895418-23911699 (+)
FVB/NJ	MGP_FVBNJ_G0015186	unclassified non-coding RNA gene	Chr17:23646731-23663301 (+)
LP/J	MGP_LPJ_G0015259	unclassified non-coding RNA gene	Chr17:25321310-25339529 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015212	unclassified non-coding RNA gene	Chr17:26600044-26616536 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015775	unclassified non-coding RNA gene	Chr17:24721843-24741831 (+)
PWK/PhJ	MGP_PWKPhJ_G0014446	unclassified non-coding RNA gene	Chr17:22670133-22686495 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014233	unclassified non-coding RNA gene	Chr17:22802102-22819396 (+)
WSB/EiJ	MGP_WSBEiJ_G0014763	unclassified non-coding RNA gene	Chr17:24776174-24793987 (+)

Homology

• Gene Tree
  Gm16278
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Gene trapped
  1
• Radiation induced
  2
• Genomic Mutations
  2 involving Gm16278
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000084862 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084862	Ensembl Gene Model | MGI Sequence Detail	16657	C57BL/6J
transcript	ENSMUST00000148064	Ensembl | MGI Sequence Detail	2071	Not Applicable

References

• Summaries
  All 8

  Phenotypes 4
• Earliest
  J:86784 Bergstrom DE, et al., Overlapping deletions spanning the proximal two-thirds of the mouse t complex. Mamm Genome. 2003 Dec;14(12):817-29
• Latest
  J:194116 Flachs P, et al., Interallelic and intergenic incompatibilities of the Prdm9 (Hst1) gene in mouse hybrid sterility. PLoS Genet. 2012;8(11):e1003044

TSS for Gm16278:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr143197	Chr17:26138315-26138342 (+)	266 bp