Gm16283 Gene Detail

Summary

• Symbol
  Gm16283
• Name
  predicted gene 16283

• Feature Type
  lncRNA gene
• IDs
  MGI:3826591
  NCBI Gene: 102635853
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr18:49888808-49894655 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 27.09 cM

Strain
Comparison

• SNPs within 2kb
  332 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3826591	lncRNA gene	Chr18:49888380-49894658 (+)
129S1/SvImJ	ENSMUSG00200031155	lncRNA gene	Chr18:46928705-46934575 (+)
A/J	ENSMUSG00195025213	lncRNA gene	Chr18:47078695-47084567 (+)
AKR/J	ENSMUSG00220021660	lncRNA gene	Chr18:47024857-47030729 (+)
BALB/cJ	ENSMUSG00180007915	lncRNA gene	Chr18:47598894-47604767 (+)
C3H/HeJ	ENSMUSG00175011128	lncRNA gene	Chr18:47197512-47203384 (+)
C57BL/6NJ	ENSMUSG00215008672	lncRNA gene	Chr18:46618903-46624778 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013497	unclassified non-coding RNA gene	Chr18:46621816-46623206 (+)
CAST/EiJ	ENSTCUG00005013840	lncRNA gene	Chr18:46498554-46504623 (+)
CBA/J	ENSMUSG00210022502	lncRNA gene	Chr18:47156554-47162425 (+)
DBA/2J	ENSMUSG00185028298	lncRNA gene	Chr18:47057510-47063381 (+)
FVB/NJ	ENSMUSG00205015018	lncRNA gene	Chr18:46533638-46539513 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230029149	lncRNA gene	Chr18:49105329-49111199 (+)
NOD/ShiLtJ	ENSMUSG00190029710	lncRNA gene	Chr18:46841375-46847248 (+)
NZO/HlLtJ	ENSMUSG00225027597	lncRNA gene	Chr18:49008033-49013903 (+)
PWK/PhJ	ENSLUMG00010022439	lncRNA gene	Chr18:47159650-47165742 (+)
SPRET/EiJ	ENSMSPG00010013696	lncRNA gene	Chr18:47464129-47469997 (+)
WSB/EiJ	ENSIUOG00005009823	lncRNA gene	Chr18:46750869-46756768 (+)

Homology

• Gene Tree
  Gm16283
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  9
• Gene trapped
  8
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm16283
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  1

• Ensembl
  ENSMUSG00000087020 (Evidence)
• NCBI Gene
  102635853

Representative Sequences			Length	Strain/Species
genomic	102635853	NCBI Gene Model | MGI Sequence Detail	5848	C57BL/6J
transcript	NR_175825	RefSeq | MGI Sequence Detail	769	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 11

  Phenotypes 4
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:327181 Lewis MA, et al., Identification and characterisation of spontaneous mutations causing deafness from a targeted knockout programme. BMC Biol. 2022 Mar 17;20(1):67

TSS for Gm16283:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr150980	Chr18:49888800-49888818 (+)	1 bp
Tssr150981	Chr18:49888833-49888852 (+)	35 bp