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Snord99 Gene Detail
Summary
  • Symbol
    Snord99
  • Name
    small nucleolar RNA, C/D box 99
  • Synonyms
    MBII-420
Location &
Maps
more
  • Sequence Map
    Chr4:132038014-132038069 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 65.16 cM
Strain
Comparison
more
  • SNPs within 2kb
    157 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3819570
 snoRNA gene Chr4:132038002-132038075 (+)
129S1/SvImJ ENSMUSG00200021007
 snoRNA gene Chr4:125492852-125492925 (+)
A/J ENSMUSG00195046274
 snoRNA gene Chr4:126817102-126817175 (+)
AKR/J ENSMUSG00220047374
 snoRNA gene Chr4:125808855-125808928 (+)
BALB/cJ ENSMUSG00180049150
 snoRNA gene Chr4:124450863-124450936 (+)
C3H/HeJ ENSMUSG00175049382
 snoRNA gene Chr4:125463259-125463332 (+)
C57BL/6NJ ENSMUSG00215052433
 snoRNA gene Chr4:126967164-126967237 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0036457
 snoRNA gene Chr4:121943602-121943675 (+)
CAST/EiJ ENSTCUG00005048005
 snoRNA gene Chr4:126365761-126365834 (+)
CBA/J ENSMUSG00210053934
 snoRNA gene Chr4:125092221-125092294 (+)
DBA/2J ENSMUSG00185053312
 snoRNA gene Chr4:126624626-126624699 (+)
FVB/NJ ENSMUSG00205047584
 snoRNA gene Chr4:124865872-124865945 (+)
JF1/MsJ ENSUMUG00000046966
 snoRNA gene Chr4:127291039-127291112 (+)
LP/J ENSMUSG00230038778
 snoRNA gene Chr4:130431335-130431408 (+)
NOD/ShiLtJ ENSMUSG00190049655
 snoRNA gene Chr4:124856938-124857011 (+)
NZO/HlLtJ ENSMUSG00225026690
 snoRNA gene Chr4:136335241-136335314 (+)
PWK/PhJ ENSLUMG00010049949
 snoRNA gene Chr4:124310089-124310162 (+)
SPRET/EiJ ENSMSPG00010044803
 snoRNA gene Chr4:126383509-126383582 (+)
WSB/EiJ ENSIUOG00005044667
 snoRNA gene Chr4:124746613-124746686 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
Sequences &
Gene Models
less
  • All Sequences
    24
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 100217437 NCBI Gene Model | MGI Sequence Detail 56 C57BL/6J ±  kb
transcript NR_028537 RefSeq | MGI Sequence Detail 56 Not Specified  
For the selected sequence
References
more
  • Summaries
    All 10
    Gene Ontology 1
    Phenotypes 1
  • Earliest
    J:69860 Huttenhofer A, et al., RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. EMBO J. 2001 Jun 1;20(11):2943-53
  • Latest
    J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/15/2026
MGI 6.29 		The Jackson Laboratory