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Snord38a Gene Detail
Summary
  • Symbol
    Snord38a
  • Name
    small nucleolar RNA, C/D box 38A
  • Synonyms
    MBII-329, U38A
Location &
Maps
more
  • Sequence Map
    Chr4:117011713-117011771 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 53.41 cM
Strain
Comparison
more
  • SNPs within 2kb
    46 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3819531
 snoRNA gene Chr4:117011711-117011781 (-)
129S1/SvImJ MGP_129S1SvImJ_G0039213
 snoRNA gene Chr4:118116980-118117050 (-)
A/J MGP_AJ_G0039209
 snoRNA gene Chr4:113564718-113564788 (-)
AKR/J MGP_AKRJ_G0039139
 snoRNA gene Chr4:116045010-116045080 (-)
BALB/cJ MGP_BALBcJ_G0039192
 snoRNA gene Chr4:114194832-114194902 (-)
C3H/HeJ MGP_C3HHeJ_G0038853
 snoRNA gene Chr4:117610969-117611039 (-)
C57BL/6NJ MGP_C57BL6NJ_G0039740
 snoRNA gene Chr4:122678161-122678231 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0036438
 snoRNA gene Chr4:107607441-107607511 (-)
CAST/EiJ MGP_CASTEiJ_G0037986
 snoRNA gene Chr4:114828048-114828118 (-)
CBA/J MGP_CBAJ_G0038824
 snoRNA gene Chr4:126026734-126026804 (-)
DBA/2J MGP_DBA2J_G0039009
 snoRNA gene Chr4:114200879-114200949 (-)
FVB/NJ MGP_FVBNJ_G0038964
 snoRNA gene Chr4:112700760-112700830 (-)
LP/J MGP_LPJ_G0039052
 snoRNA gene Chr4:118296401-118296471 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0038965
 snoRNA gene Chr4:130978188-130978258 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0039839
 snoRNA gene Chr4:117192995-117193065 (-)
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0037421
 snoRNA gene Chr4:113491267-113491337 (-)
WSB/EiJ MGP_WSBEiJ_G0038217
 snoRNA gene Chr4:117067338-117067408 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    22
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 100217424 NCBI Gene Model | MGI Sequence Detail 59 C57BL/6J ±  kb
transcript NR_028524 RefSeq | MGI Sequence Detail 59 Not Specified  
For the selected sequence
References
more
  • Summaries
    All 9
    Phenotypes 3
  • Earliest
    J:69860 Huttenhofer A, et al., RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. EMBO J. 2001 Jun 1;20(11):2943-53
  • Latest
    J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/23/2024
MGI 6.23 		The Jackson Laboratory