Snord16a Gene Detail

Summary

• Symbol
  Snord16a
• Name
  small nucleolar RNA, C/D box 16A
• Synonyms
  MBII-98, U16

• Feature Type
  snoRNA gene
• IDs
  MGI:3819522
  NCBI Gene: 100217453
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:64082714-64082804 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 34.54 cM

Strain
Comparison

• SNPs within 2kb
  73 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3819522	snoRNA gene	Chr9:64082705-64082804 (+)
129S1/SvImJ	ENSMUSG00200043410	snoRNA gene	Chr9:61185270-61185368 (+)
A/J	ENSMUSG00195026463	snoRNA gene	Chr9:60894898-60894996 (+)
AKR/J	ENSMUSG00220043355	snoRNA gene	Chr9:61045288-61045386 (+)
BALB/cJ	ENSMUSG00180018273	snoRNA gene	Chr9:61032952-61033050 (+)
C3H/HeJ	ENSMUSG00175012891	snoRNA gene	Chr9:61028670-61028768 (+)
C57BL/6NJ	ENSMUSG00215034595	snoRNA gene	Chr9:61020065-61020163 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005034513	snoRNA gene	Chr9:60940871-60940969 (+)
CBA/J	ENSMUSG00210014413	snoRNA gene	Chr9:61116121-61116219 (+)
DBA/2J	ENSMUSG00185036065	snoRNA gene	Chr9:61139334-61139432 (+)
FVB/NJ	ENSMUSG00205033328	snoRNA gene	Chr9:61465515-61465613 (+)
JF1/MsJ	ENSUMUG00000038220	snoRNA gene	Chr9:61203082-61203180 (+)
LP/J	ENSMUSG00230027786	snoRNA gene	Chr9:61384416-61384514 (+)
NOD/ShiLtJ	ENSMUSG00190022550	snoRNA gene	Chr9:61224905-61225003 (+)
NZO/HlLtJ	ENSMUSG00225046728	snoRNA gene	Chr9:61449705-61449803 (+)
PWK/PhJ	ENSLUMG00010027653	snoRNA gene	Chr9:61167777-61167875 (+)
SPRET/EiJ	ENSMSPG00010023073	snoRNA gene	Chr9:62227369-62227467 (+)
WSB/EiJ	ENSIUOG00005027334	snoRNA gene	Chr9:60631706-60631804 (+)

Homology

• Gene Tree
  Snord16a
  

Gene Ontology
(GO)
Classifications

• All GO Annotations
  2
• GO References
  1

Expression

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000119388 (Evidence)
• NCBI Gene
  100217453

Representative Sequences			Length	Strain/Species
genomic	100217453	NCBI Gene Model | MGI Sequence Detail	91	C57BL/6J
transcript	NR_028548	RefSeq | MGI Sequence Detail	91	Not Specified

References

• Summaries
  All 8

  Gene Ontology 1
• Earliest
  J:69860 Huttenhofer A, et al., RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. EMBO J. 2001 Jun 1;20(11):2943-53
• Latest
  J:69869 Baran V, et al., Nopp 140 involvement in nucleologenesis of mouse preimplantation embryos. Mol Reprod Dev. 2001 Jul;59(3):277-84

TSS for Snord16a:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr85598	Chr9:64082704-64082708 (+)	-8 bp