Snora61 MGI Mouse Gene Detail - MGI:3819510 - small nucleolar RNA, H/ACA box 61

Symbol

Snora61
Name

small nucleolar RNA, H/ACA box 61
Synonyms

MBI-164

Feature Type

snoRNA gene
IDs

MGI:3819510
NCBI Gene: 100217440
Alliance

genome feature page
Transcription Start Sites

1 TSS

Sequence Map

Chr4:132037618-132037679 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 4, 65.16 cM

SNPs within 2kb

147 from dbSNP Build 142
Strain Annotations

32

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3819510	snoRNA gene	Chr4:132037551-132037680 (+)
129S1/SvImJ	ENSMUSG00200020996	snoRNA gene	Chr4:125492397-125492526 (+)
129S1/SvImJ	ENSMUSG00200005289	snoRNA gene	Chr1:64726631-64726760 (-)
A/J	ENSMUSG00195033096	snoRNA gene	Chr1:64250242-64250371 (-)
A/J	ENSMUSG00195046233	snoRNA gene	Chr4:126816651-126816780 (+)
AKR/J	ENSMUSG00220047337	snoRNA gene	Chr4:125808404-125808533 (+)
BALB/cJ	ENSMUSG00180049123	snoRNA gene	Chr4:124450411-124450540 (+)
C3H/HeJ	ENSMUSG00175049318	snoRNA gene	Chr4:125462808-125462937 (+)
C3H/HeJ	ENSMUSG00175000971	snoRNA gene	Chr1:64638444-64638573 (-)
C57BL/6NJ	ENSMUSG00215052425	snoRNA gene	Chr4:126966713-126966842 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036456	snoRNA gene	Chr4:121943120-121943253 (+)
CAST/EiJ	ENSTCUG00005047993	snoRNA gene	Chr4:126365308-126365437 (+)
CBA/J	ENSMUSG00210053931	snoRNA gene	Chr4:125091770-125091899 (+)
CBA/J	ENSMUSG00210003354	snoRNA gene	Chr1:64318495-64318624 (-)
DBA/2J	ENSMUSG00185053283	snoRNA gene	Chr4:126624175-126624304 (+)
DBA/2J	ENSMUSG00185005438	snoRNA gene	Chr1:65435683-65435812 (-)
FVB/NJ	ENSMUSG00205047572	snoRNA gene	Chr4:124865403-124865532 (+)
FVB/NJ	ENSMUSG00205016548	snoRNA gene	Chr1:64256273-64256402 (-)
JF1/MsJ	ENSUMUG00000046898	snoRNA gene	Chr4:127290586-127290715 (+)
JF1/MsJ	ENSUMUG00000055412	snoRNA gene	Chr5:35202901-35203030 (-)
LP/J	ENSMUSG00230003323	snoRNA gene	Chr1:65430059-65430188 (-)
LP/J	ENSMUSG00230038733	snoRNA gene	Chr4:130430880-130431009 (+)
NOD/ShiLtJ	ENSMUSG00190014687	snoRNA gene	Chr1:64501399-64501528 (-)
NOD/ShiLtJ	ENSMUSG00190049619	snoRNA gene	Chr4:124856487-124856616 (+)
NZO/HlLtJ	ENSMUSG00225001691	snoRNA gene	Chr1:68644053-68644182 (-)
NZO/HlLtJ	ENSMUSG00225026663	snoRNA gene	Chr4:136334790-136334919 (+)
PWK/PhJ	ENSLUMG00010050028	snoRNA gene	Chr5:27918404-27918533 (-)
PWK/PhJ	ENSLUMG00010038078	snoRNA gene	Chr17:45579006-45579135 (+)
PWK/PhJ	ENSLUMG00010049940	snoRNA gene	Chr4:124309638-124309767 (+)
SPRET/EiJ	ENSMSPG00010044841	snoRNA gene	Chr4:126383039-126383168 (+)
WSB/EiJ	ENSIUOG00005044632	snoRNA gene	Chr4:124746162-124746291 (+)
WSB/EiJ	ENSIUOG00005030291	snoRNA gene	Chr1:64187800-64187929 (-)

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Gene Tree

Snora61

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Phenotype Summary

1 phenotype reference

All Mutations and Alleles

1
Targeted

1
Genomic Mutations

1 involving Snora61
Find Mice (IMSR)

0 strains or lines available

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All GO Annotations

2
GO References

1

Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

carbohydrate derivative metabolism	cell differentiation	cell population proliferation	cellular component organization	DNA-templated transcription	establishment of localization	homeostatic process	immune system process	lipid metabolic process	programmed cell death	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

597

Tissue x Stage Matrix

Other Mouse Links

GEO

Expression Atlas

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All Sequences

37
RefSeq

1

Ensembl

ENSMUSG00000064949 (Evidence)
NCBI Gene

100217440

Representative Sequences				Length	Strain/Species	Flank
	genomic	100217440	NCBI Gene Model \| MGI Sequence Detail	62	C57BL/6J	± kb
	transcript	NR_034046	RefSeq \| MGI Sequence Detail	62	Not Specified

Summaries

All 10

Gene Ontology 1

Phenotypes 1
Earliest

J:69860 Huttenhofer A, et al., RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. EMBO J. 2001 Jun 1;20(11):2943-53
Latest

J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8

TSS for Snora61:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr39368	Chr4:132037439-132037485 (+)	-156 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 09/15/2026 MGI 6.29