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Snora5c Gene Detail
Summary
  • Symbol
    Snora5c
  • Name
    small nucleolar RNA, H/ACA box 5C
  • Synonyms
    ACA5c, MBI-80
Location &
Maps
more
  • Sequence Map
    Chr11:6570319-6570419 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 4.60 cM
Strain
Comparison
more
  • SNPs within 2kb
    24 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3819509
 snoRNA gene Chr11:6570319-6570454 (-)
129S1/SvImJ MGP_129S1SvImJ_G0038544
 snoRNA gene Chr11:3769091-3769226 (-)
A/J MGP_AJ_G0038534
 snoRNA gene Chr11:3599325-3599460 (-)
AKR/J MGP_AKRJ_G0038472
 snoRNA gene Chr11:3774474-3774609 (-)
BALB/cJ MGP_BALBcJ_G0038521
 snoRNA gene Chr11:3607222-3607357 (-)
C3H/HeJ MGP_C3HHeJ_G0038184
 snoRNA gene Chr11:3665143-3665278 (-)
C57BL/6NJ MGP_C57BL6NJ_G0039059
 snoRNA gene Chr11:3862484-3862619 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0035837
 snoRNA gene Chr11:3481422-3481557 (-)
CAST/EiJ MGP_CASTEiJ_G0037328
 snoRNA gene Chr11:3653296-3653431 (-)
CBA/J MGP_CBAJ_G0038156
 snoRNA gene Chr11:4294672-4294807 (-)
DBA/2J MGP_DBA2J_G0038346
 snoRNA gene Chr11:3508536-3508671 (-)
FVB/NJ MGP_FVBNJ_G0038297
 snoRNA gene Chr11:3535571-3535706 (-)
LP/J MGP_LPJ_G0038386
 snoRNA gene Chr11:3831039-3831174 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0038296
 snoRNA gene Chr11:3841612-3841747 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0039168
 snoRNA gene Chr11:3805074-3805209 (-)
PWK/PhJ MGP_PWKPhJ_G0037014
 snoRNA gene Chr11:3547200-3547335 (-)
SPRET/EiJ MGP_SPRETEiJ_G0036770
 snoRNA gene Chr11:3751863-3751998 (-)
WSB/EiJ MGP_WSBEiJ_G0037559
 snoRNA gene Chr11:3635142-3635277 (-)



Homology
less
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    23
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 100217467 NCBI Gene Model | MGI Sequence Detail 101 C57BL/6J ±  kb
transcript NR_034042 RefSeq | MGI Sequence Detail 101 C57BL/6  
For the selected sequence
References
more
  • Summaries
    All 6
  • Earliest
    J:69860 Huttenhofer A, et al., RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. EMBO J. 2001 Jun 1;20(11):2943-53
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory