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Scarna6 Gene Detail
Summary
  • Symbol
    Scarna6
  • Name
    small Cajal body-specific RNA 6
  • Synonyms
    MBI-46, U88
Location &
Maps
more
  • Sequence Map
    Chr1:87712293-87712540 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 44.44 cM
Strain
Comparison
more
  • SNPs within 2kb
    100 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3819487
 snoRNA gene Chr1:87712278-87712542 (+)
129S1/SvImJ ENSMUSG00200038196
 snoRNA gene Chr1:84938224-84938488 (+)
A/J ENSMUSG00195032956
 snoRNA gene Chr1:84498725-84498989 (+)
AKR/J ENSMUSG00220046148
 snoRNA gene Chr1:84632058-84632322 (+)
BALB/cJ ENSMUSG00180018590
 snoRNA gene Chr1:84801484-84801748 (+)
C3H/HeJ ENSMUSG00175001685
 snoRNA gene Chr1:84680417-84680681 (+)
C57BL/6NJ ENSMUSG00215035398
 snoRNA gene Chr1:84603396-84603660 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0034364
 snoRNA gene Chr1:80267275-80267538 (+)
CAST/EiJ ENSTCUG00005007856
 snoRNA gene Chr1:84233497-84233761 (+)
CBA/J ENSMUSG00210012388
 snoRNA gene Chr1:84525722-84525986 (+)
DBA/2J ENSMUSG00185017129
 snoRNA gene Chr1:88983031-88983295 (+)
FVB/NJ ENSMUSG00205044082
 snoRNA gene Chr1:83932784-83933048 (+)
JF1/MsJ ENSUMUG00000019050
 snoRNA gene Chr1:87738528-87738792 (+)
LP/J ENSMUSG00230022887
 snoRNA gene Chr1:88267735-88267999 (+)
NOD/ShiLtJ ENSMUSG00190032023
 snoRNA gene Chr1:84573586-84573850 (+)
NZO/HlLtJ ENSMUSG00225004932
 snoRNA gene Chr1:92170466-92170730 (+)
PWK/PhJ ENSLUMG00010046952
 snoRNA gene Chr1:84125551-84125815 (+)
SPRET/EiJ ENSMSPG00010047721
 snoRNA gene Chr1:86147620-86147884 (+)
WSB/EiJ ENSIUOG00005043151
 snoRNA gene Chr1:84161307-84161571 (+)



Homology
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
Sequences &
Gene Models
less
  • All Sequences
    24
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 100217415 NCBI Gene Model | MGI Sequence Detail 248 C57BL/6J ±  kb
transcript NR_028519 RefSeq | MGI Sequence Detail 248 Not Specified  
For the selected sequence
References
more
  • Summaries
    All 9
    Gene Ontology 1
  • Earliest
    J:69860 Huttenhofer A, et al., RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. EMBO J. 2001 Jun 1;20(11):2943-53
  • Latest
    J:69869 Baran V, et al., Nopp 140 involvement in nucleologenesis of mouse preimplantation embryos. Mol Reprod Dev. 2001 Jul;59(3):277-84
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory