Scarna3b Gene Detail

Summary

• Symbol
  Scarna3b
• Name
  small Cajal body-specific RNA 3B
• Synonyms
  Gm50278, MBI-100

• Feature Type
  snoRNA gene
  BioType Conflict
  
• IDs
  MGI:3819486
  NCBI Gene: 100217447
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:80438388-80438511 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  108 from dbSNP Build 142
• Strain Annotations
  35

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3819486	snoRNA gene	Chr12:80438387-80438525 (-)
129S1/SvImJ	ENSMUSG00200050509	snoRNA gene	Chr12:72408451-72408589 (-)
129S1/SvImJ	ENSMUSG00200050513	lncRNA gene	Chr12:72408452-72408575 (-)
A/J	ENSMUSG00195033333	snoRNA gene	Chr12:75102031-75102169 (-)
A/J	ENSMUSG00195033341	lncRNA gene	Chr12:75102032-75102155 (-)
AKR/J	ENSMUSG00220050153	snoRNA gene	Chr12:72891412-72891550 (-)
AKR/J	ENSMUSG00220050165	lncRNA gene	Chr12:72891413-72891536 (-)
BALB/cJ	ENSMUSG00180026118	lncRNA gene	Chr12:74072706-74072829 (-)
BALB/cJ	ENSMUSG00180026107	snoRNA gene	Chr12:74072705-74072843 (-)
C3H/HeJ	ENSMUSG00175045810	lncRNA gene	Chr12:77234239-77234362 (-)
C3H/HeJ	ENSMUSG00175045793	snoRNA gene	Chr12:77234238-77234376 (-)
C57BL/6NJ	ENSMUSG00215045916	snoRNA gene	Chr12:73438162-73438300 (-)
C57BL/6NJ	ENSMUSG00215045923	lncRNA gene	Chr12:73438163-73438286 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005034457	snoRNA gene	Chr12:73369963-73370101 (-)
CAST/EiJ	ENSTCUG00005034478	lncRNA gene	Chr12:73369964-73370087 (-)
CBA/J	ENSMUSG00210047945	lncRNA gene	Chr12:73648500-73648623 (-)
CBA/J	ENSMUSG00210047937	snoRNA gene	Chr12:73648499-73648637 (-)
DBA/2J	ENSMUSG00185043457	snoRNA gene	Chr12:75509254-75509392 (-)
DBA/2J	ENSMUSG00185043470	lncRNA gene	Chr12:75509255-75509378 (-)
FVB/NJ	ENSMUSG00205040866	snoRNA gene	Chr12:73255677-73255815 (-)
FVB/NJ	ENSMUSG00205040906	lncRNA gene	Chr12:73255678-73255801 (-)
JF1/MsJ	ENSUMUG00000023693	snoRNA gene	Chr12:79497130-79497268 (-)
JF1/MsJ	ENSUMUG00000023710	lncRNA gene	Chr12:79497131-79497254 (-)
LP/J	ENSMUSG00230046412	lncRNA gene	Chr12:82526559-82526682 (-)
LP/J	ENSMUSG00230046207	snoRNA gene	Chr12:82526558-82526696 (-)
NOD/ShiLtJ	ENSMUSG00190047436	snoRNA gene	Chr12:72712199-72712337 (-)
NOD/ShiLtJ	ENSMUSG00190047448	lncRNA gene	Chr12:72712200-72712323 (-)
NZO/HlLtJ	ENSMUSG00225052160	lncRNA gene	Chr12:84580538-84580661 (-)
NZO/HlLtJ	ENSMUSG00225052062	snoRNA gene	Chr12:84580537-84580675 (-)
PWK/PhJ	ENSLUMG00010031403	lncRNA gene	Chr12:73514037-73514160 (-)
PWK/PhJ	ENSLUMG00010031370	snoRNA gene	Chr12:73514036-73514174 (-)
SPRET/EiJ	ENSMSPG00010021454	lncRNA gene	Chr12:75330276-75330399 (-)
SPRET/EiJ	ENSMSPG00010021442	snoRNA gene	Chr12:75330275-75330413 (-)
WSB/EiJ	ENSIUOG00005044536	lncRNA gene	Chr12:73321176-73321299 (-)
WSB/EiJ	ENSIUOG00005044516	snoRNA gene	Chr12:73321175-73321313 (-)

Gene Ontology
(GO)
Classifications

• All GO Annotations
  3
• GO References
  1

Expression

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  42
• RefSeq
  1

• Ensembl
  ENSMUSG00000112285 (Evidence), ENSMUSG00002076250 (Evidence)
• NCBI Gene
  100217447

Representative Sequences			Length	Strain/Species
genomic	100217447	NCBI Gene Model | MGI Sequence Detail	124	C57BL/6J
transcript	NR_028544	RefSeq | MGI Sequence Detail	124	Not Specified

Other
Accession IDs

MGI:6303111

References

• Summaries
  All 9

  Gene Ontology 1
• Earliest
  J:69860 Huttenhofer A, et al., RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. EMBO J. 2001 Jun 1;20(11):2943-53
• Latest
  J:69869 Baran V, et al., Nopp 140 involvement in nucleologenesis of mouse preimplantation embryos. Mol Reprod Dev. 2001 Jul;59(3):277-84