BC048559 Gene Detail

Summary

• Symbol
  BC048559
• Name
  cDNA sequence BC048559

• Feature Type
  lncRNA gene
• IDs
  MGI:3814724
  NCBI Gene: 100196896
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:41622717-41656730 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic

Strain
Comparison

• SNPs within 2kb
  878 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3814724	lncRNA gene	Chr10:41622691-41659433 (+)
129S1/SvImJ	ENSMUSG00200009214	lncRNA gene	Chr10:38500183-38536851 (+)
A/J	ENSMUSG00195019279	lncRNA gene	Chr10:38784237-38820955 (+)
AKR/J	ENSMUSG00220027683	lncRNA gene	Chr10:38460717-38497434 (+)
BALB/cJ	ENSMUSG00180016668	lncRNA gene	Chr10:38869331-38906047 (+)
C3H/HeJ	ENSMUSG00175012555	lncRNA gene	Chr10:38663592-38700312 (+)
C57BL/6NJ	ENSMUSG00215010237	lncRNA gene	Chr10:38412929-38449645 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005029371	lncRNA gene	Chr10:38867030-38904172 (+)
CBA/J	ENSMUSG00210026218	lncRNA gene	Chr10:38557066-38593784 (+)
DBA/2J	ENSMUSG00185007788	lncRNA gene	Chr10:38709714-38746430 (+)
FVB/NJ	ENSMUSG00205015405	lncRNA gene	Chr10:38624905-38661621 (+)
JF1/MsJ	ENSUMUG00000038465	lncRNA gene	Chr10:38488227-38540030 (+)
LP/J	ENSMUSG00230005981	lncRNA gene	Chr10:40490025-40526693 (+)
NOD/ShiLtJ	ENSMUSG00190035962	lncRNA gene	Chr10:38837863-38874581 (+)
NZO/HlLtJ	ENSMUSG00225018765	lncRNA gene	Chr10:44802700-44839416 (+)
PWK/PhJ	ENSLUMG00010008142	lncRNA gene	Chr10:38615598-38654609 (+)
SPRET/EiJ	ENSMSPG00010021356	lncRNA gene	Chr10:39651680-39689839 (+)
WSB/EiJ	ENSIUOG00005015679	lncRNA gene	Chr10:38395560-38432291 (+)

Homology

• Gene Tree
  BC048559
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  30
• Chemically induced (other)
  1
• Gene trapped
  28
• Radiation induced
  1
• Genomic Mutations
  2 involving BC048559
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  1

• Ensembl
  ENSMUSG00000102114 (Evidence)
• NCBI Gene
  100196896

Representative Sequences			Length	Strain/Species
genomic	100196896	NCBI Gene Model | MGI Sequence Detail	34014	C57BL/6J
transcript	NR_152819	RefSeq | MGI Sequence Detail	858	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 14

  Phenotypes 7
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for BC048559:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr93063	Chr10:41622745-41622754 (+)	33 bp