Mir1904 Gene Detail

Summary

• Symbol
  Mir1904
• Name
  microRNA 1904
• Synonyms
  Mirn1904, mmu-mir-1904

• Feature Type
  miRNA gene
• IDs
  MGI:3811419
  NCBI Gene: 100316683
• Alliance
  genome feature page
• Transcription Start Sites
  9 TSS

Location &
Maps

• Sequence Map
  Chr13:110040343-110040422 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 60.84 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  95 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3811419	miRNA gene	Chr13:110040343-110040422 (+)
129S1/SvImJ	ENSMUSG00200032840	miRNA gene	Chr13:104499897-104499976 (+)
A/J	ENSMUSG00195013422	miRNA gene	Chr13:105027789-105027868 (+)
AKR/J	ENSMUSG00220031632	miRNA gene	Chr13:103454987-103455066 (+)
BALB/cJ	ENSMUSG00180031840	miRNA gene	Chr13:105599179-105599258 (+)
C3H/HeJ	ENSMUSG00175027182	miRNA gene	Chr13:105692203-105692282 (+)
C57BL/6NJ	ENSMUSG00215026831	miRNA gene	Chr13:105697890-105697969 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0007351	miRNA gene	Chr13:103241933-103242012 (+)
CAST/EiJ	ENSTCUG00005026817	miRNA gene	Chr13:104758013-104758092 (+)
CBA/J	ENSMUSG00210010699	miRNA gene	Chr13:105019535-105019614 (+)
DBA/2J	ENSMUSG00185027690	miRNA gene	Chr13:108775464-108775543 (+)
FVB/NJ	ENSMUSG00205007175	miRNA gene	Chr13:104456449-104456528 (+)
JF1/MsJ	ENSUMUG00000012786	miRNA gene	Chr13:108273157-108273236 (+)
LP/J	ENSMUSG00230008592	miRNA gene	Chr13:118967683-118967762 (+)
NOD/ShiLtJ	ENSMUSG00190020634	miRNA gene	Chr13:105329858-105329937 (+)
NZO/HlLtJ	ENSMUSG00225037730	miRNA gene	Chr13:111192626-111192705 (+)
PWK/PhJ	ENSLUMG00010010103	miRNA gene	Chr13:104295709-104295788 (+)
SPRET/EiJ	ENSMSPG00010018068	miRNA gene	Chr13:105971285-105971364 (+)
WSB/EiJ	ENSIUOG00005009937	miRNA gene	Chr13:104473398-104473477 (+)

Homology

• Gene Tree
  Mir1904
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000084651 (Evidence)
• NCBI Gene
  100316683

Representative Sequences			Length	Strain/Species
genomic	100316683	NCBI Gene Model | MGI Sequence Detail	80	C57BL/6J
transcript	NR_035442	RefSeq | MGI Sequence Detail	80	ZRU/MplStud

Other Database
Links

miRBase

MI0008323

References

• Summaries
  All 8

  Phenotypes 1
• Earliest
  J:105741 Griffiths-Jones S, et al., miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4
• Latest
  J:233799 Forno I, et al., Deregulation of MiR-34b/Sox2 Predicts Prostate Cancer Progression. PLoS One. 2015;10(6):e0130060

TSS for Mir1904:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr121022	Chr13:110039171-110039234 (+)	-1,140 bp
Tssr121023	Chr13:110039367-110039389 (+)	-965 bp
Tssr121024	Chr13:110039390-110039401 (+)	-947 bp
Tssr121025	Chr13:110039587-110039598 (+)	-750 bp
Tssr121026	Chr13:110039623-110039644 (+)	-709 bp
Tssr121027	Chr13:110039657-110039667 (+)	-681 bp
Tssr121028	Chr13:110039900-110039915 (+)	-435 bp
Tssr121029	Chr13:110039922-110039940 (+)	-412 bp
Tssr121030	Chr13:110039967-110039975 (+)	-372 bp