Gm16280 Gene Detail

Summary

• Symbol
  Gm16280
• Name
  predicted gene 16280
• Synonyms
  ENSMUSG00000080118

• Feature Type
  lncRNA gene
• IDs
  MGI:3809105
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:86744584-86745877 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 43.20 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  80 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3809105	lncRNA gene	Chr10:86744584-86745877 (+)
129S1/SvImJ	ENSMUSG00200030429	lncRNA gene	Chr10:83241611-83242863 (+)
A/J	ENSMUSG00195023656	lncRNA gene	Chr10:83686678-83687930 (+)
AKR/J	ENSMUSG00220023101	lncRNA gene	Chr10:83288956-83290208 (+)
BALB/cJ	ENSMUSG00180035823	lncRNA gene	Chr10:83689789-83691041 (+)
C3H/HeJ	ENSMUSG00175024361	lncRNA gene	Chr10:83579400-83580652 (+)
C57BL/6NJ	ENSMUSG00215030720	lncRNA gene	Chr10:83236239-83237491 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002540	antisense lncRNA gene	Chr10:80789148-80791010 (+)
CAST/EiJ	ENSTCUG00005037769	lncRNA gene	Chr10:82998023-82999323 (+)
CBA/J	ENSMUSG00210036512	lncRNA gene	Chr10:83420803-83422055 (+)
DBA/2J	ENSMUSG00185044657	lncRNA gene	Chr10:83635348-83636604 (+)
FVB/NJ	ENSMUSG00205023274	lncRNA gene	Chr10:83295051-83296303 (+)
JF1/MsJ	ENSUMUG00000030178	lncRNA gene	Chr10:84991792-84993044 (+)
LP/J	ENSMUSG00230018545	lncRNA gene	Chr10:85524217-85525469 (+)
NOD/ShiLtJ	ENSMUSG00190019484	lncRNA gene	Chr10:83672236-83673488 (+)
NZO/HlLtJ	ENSMUSG00225053785	lncRNA gene	Chr10:89795438-89796690 (+)
PWK/PhJ	ENSLUMG00010024368	lncRNA gene	Chr10:83285116-83286368 (+)
SPRET/EiJ	ENSMSPG00010035338	lncRNA gene	Chr10:84742602-84743810 (+)
WSB/EiJ	ENSIUOG00005038703	lncRNA gene	Chr10:83363621-83364873 (+)

Homology

• Gene Tree
  Gm16280
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm16280
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000089881 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089881	Ensembl Gene Model | MGI Sequence Detail	1294	C57BL/6J
transcript	ENSMUST00000162458	Ensembl | MGI Sequence Detail	664	Not Applicable

References

• Summaries
  All 10

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Gm16280:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr95015	Chr10:86744580-86744590 (+)	1 bp