Gm1604a Gene Detail

Summary

• Symbol
  Gm1604a
• Name
  predicted gene 1604A

• Feature Type
  lncRNA gene
• IDs
  MGI:3807545
  NCBI Gene: 100040822
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:8099933-8320245 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 4.85 cM

Strain
Comparison

• SNPs within 2kb
  2726 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3807545	lncRNA gene	Chr17:8073905-8326847 (-)
129S1/SvImJ	no annotation
A/J	ENSMUSG00195023718	lncRNA gene	Chr17:4655348-4774031 (-)
AKR/J	ENSMUSG00220030919	lncRNA gene	Chr17:3845856-3848862 (+)
AKR/J	ENSMUSG00220029065	lncRNA gene	Chr17:4709878-4828538 (-)
BALB/cJ	ENSMUSG00180029106	lncRNA gene	Chr17:3440950-3443966 (+)
BALB/cJ	ENSMUSG00180027337	lncRNA gene	Chr17:4300789-4419423 (-)
C3H/HeJ	ENSMUSG00175035618	lncRNA gene	Chr17:4445889-4564572 (-)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005022766	lncRNA gene	Chr17:3727932-3848732 (+)
CBA/J	ENSMUSG00210039140	lncRNA gene	Chr17:4112737-4231398 (-)
DBA/2J	ENSMUSG00185024430	lncRNA gene	Chr17:5205368-5324036 (-)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000041404	lncRNA gene	Chr17:3875895-3990689 (+)
LP/J	ENSMUSG00230034873	lncRNA gene	Chr17:6613597-6748866 (-)
NOD/ShiLtJ	ENSMUSG00190038359	lncRNA gene	Chr17:4420109-4486752 (-)
NZO/HlLtJ	ENSMUSG00225029094	lncRNA gene	Chr17:8550492-8669164 (-)
PWK/PhJ	ENSLUMG00010019352	lncRNA gene	Chr17:4650034-4736110 (-)
SPRET/EiJ	ENSMSPG00010038764	lncRNA gene	Chr17:9553020-9617815 (+)
WSB/EiJ	ENSIUOG00005014775	lncRNA gene	Chr17:3696357-3815814 (+)

Homology

• Gene Tree
  Gm1604a
  

Human Diseases

• References
  6 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  375 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Gm1604a
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  38
• RefSeq
  6

• Ensembl
  ENSMUSG00000116760 (Evidence)
• NCBI Gene
  100040822

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116760	Ensembl Gene Model | MGI Sequence Detail	220313	C57BL/6J
transcript	ENSMUST00000231264	Ensembl | MGI Sequence Detail	2926	Not Applicable

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 382

  Diseases 6

  Phenotypes 375
• Earliest
  J:30229 Davisson MT, et al., Segmental trisomy as a mouse model for Down syndrome. Prog Clin Biol Res. 1993;384:117-33
• Latest
  J:393614 Sierra C, et al., HDAC inhibitor treatment restores transcriptome, chromatin accessibility, and memory deficits in a mouse model for Down syndrome. iScience. 2026 Oct 16;29(10):117670

TSS for Gm1604a:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr146354	Chr17:8206069-8206071 (-)	114,175 bp