Gm15898 Gene Detail

Summary

• Symbol
  Gm15898
• Name
  predicted gene 15898

• Feature Type
  lncRNA gene
• IDs
  MGI:3802167
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr8:120821799-120824475 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 68.95 cM

Strain
Comparison

• SNPs within 2kb
  40 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3802167	lncRNA gene	Chr8:120821799-120824475 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0037085	sense intronic lncRNA gene	Chr8:123476759-123479435 (+)
A/J	MGP_AJ_G0037073	sense intronic lncRNA gene	Chr8:118372566-118375242 (+)
AKR/J	MGP_AKRJ_G0037020	sense intronic lncRNA gene	Chr8:121809281-121811957 (+)
BALB/cJ	MGP_BALBcJ_G0037064	sense intronic lncRNA gene	Chr8:118581043-118583719 (+)
C3H/HeJ	MGP_C3HHeJ_G0036751	sense intronic lncRNA gene	Chr8:122533840-122536516 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0037576	sense intronic lncRNA gene	Chr8:127585986-127588662 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034620	sense intronic lncRNA gene	Chr8:111256070-111258818 (+)
CAST/EiJ	MGP_CASTEiJ_G0035937	sense intronic lncRNA gene	Chr8:122504681-122507514 (+)
CBA/J	MGP_CBAJ_G0036726	sense intronic lncRNA gene	Chr8:132250785-132253461 (+)
DBA/2J	MGP_DBA2J_G0036901	sense intronic lncRNA gene	Chr8:117590670-117593346 (+)
FVB/NJ	MGP_FVBNJ_G0036851	sense intronic lncRNA gene	Chr8:116646273-116648949 (+)
LP/J	MGP_LPJ_G0036948	sense intronic lncRNA gene	Chr8:123611353-123614029 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036858	sense intronic lncRNA gene	Chr8:134670004-134672680 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037694	sense intronic lncRNA gene	Chr8:121971831-121974507 (+)
PWK/PhJ	MGP_PWKPhJ_G0035631	sense intronic lncRNA gene	Chr8:117357450-117360612 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0035439	sense intronic lncRNA gene	Chr8:120672691-120675920 (+)
WSB/EiJ	MGP_WSBEiJ_G0036139	sense intronic lncRNA gene	Chr8:122702707-122705477 (+)

Homology

• Gene Tree
  Gm15898
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000089742 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089742	Ensembl Gene Model | MGI Sequence Detail	2677	C57BL/6J
transcript	ENSMUST00000162213	Ensembl | MGI Sequence Detail	627	Not Applicable

References

• Summaries
  All 5

  Phenotypes 1
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;