Gm16062 Gene Detail

Summary

• Symbol
  Gm16062
• Name
  predicted gene 16062

• Feature Type
  lncRNA gene
• IDs
  MGI:3802162
  NCBI Gene: 100504104
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr11:59700906-59709188 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 37.80 cM

Strain
Comparison

• SNPs within 2kb
  330 from dbSNP Build 142
• Strain Annotations
  22

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3802162	lncRNA gene	Chr11:59700734-59709317 (+)
129S1/SvImJ	ENSMUSG00200037472	lncRNA gene	Chr11:56708456-56716846 (+)
A/J	ENSMUSG00195044081	lncRNA gene	Chr11:56644659-56653193 (+)
A/J	ENSMUSG00195035582	protein coding gene	Chr11:56644430-56654826 (+)
AKR/J	ENSMUSG00220050454	lncRNA gene	Chr11:56813938-56822334 (+)
BALB/cJ	ENSMUSG00180050040	lncRNA gene	Chr11:56724546-56732970 (+)
C3H/HeJ	ENSMUSG00175050319	lncRNA gene	Chr11:56679783-56688319 (+)
C3H/HeJ	ENSMUSG00175042736	protein coding gene	Chr11:56679554-56689952 (+)
C57BL/6NJ	ENSMUSG00215041007	lncRNA gene	Chr11:56491864-56500288 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002621	antisense lncRNA gene	Chr11:54631752-54640483 (+)
CAST/EiJ	ENSTCUG00005047450	lncRNA gene	Chr11:56218925-56227384 (+)
CBA/J	ENSMUSG00210040706	lncRNA gene	Chr11:56531145-56539679 (+)
CBA/J	ENSMUSG00210034206	protein coding gene	Chr11:56530916-56541312 (+)
DBA/2J	ENSMUSG00185044252	lncRNA gene	Chr11:56708142-56716568 (+)
FVB/NJ	ENSMUSG00205051729	lncRNA gene	Chr11:56598264-56606682 (+)
JF1/MsJ	ENSUMUG00000049088	lncRNA gene	Chr11:57063108-57071644 (+)
LP/J	ENSMUSG00230050421	lncRNA gene	Chr11:57916446-57924836 (+)
NOD/ShiLtJ	ENSMUSG00190051402	lncRNA gene	Chr11:56777705-56786097 (+)
NZO/HlLtJ	ENSMUSG00225033242	lncRNA gene	Chr11:59928701-59937097 (+)
PWK/PhJ	ENSLUMG00010035634	lncRNA gene	Chr11:56524140-56532549 (+)
SPRET/EiJ	ENSMSPG00010041950	lncRNA gene	Chr11:57302206-57310920 (+)
WSB/EiJ	ENSIUOG00005041078	lncRNA gene	Chr11:56582413-56590945 (+)

Homology

• Gene Tree
  Gm16062
  

Human Diseases

• References
  3 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  17 phenotype references
  

• All Mutations and Alleles
  128
• Chemically induced (other)
  1
• Endonuclease-mediated
  1
• Gene trapped
  123
• Targeted
  3
• Genomic Mutations
  4 involving Gm16062
• Find Mice (IMSR)
  96 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  10

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000087249 (Evidence)
• NCBI Gene
  100504104

Representative Sequences			Length	Strain/Species
genomic	100504104	NCBI Gene Model | MGI Sequence Detail	8283	C57BL/6J
transcript	NR_045686	RefSeq | MGI Sequence Detail	642	C57BL/6
polypeptide	Q3UMG8	UniProt | EBI | MGI Sequence Detail	118	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 10

  cDNA 10

  
  

  Microarray probesets 1

References

• Summaries
  All 29

  Diseases 3

  Phenotypes 17
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:185284 Lacaria M, et al., Enriched rearing improves behavioral responses of an animal model for CNV-based autistic-like traits. Hum Mol Genet. 2012 Jul 15;21(14):3083-96

TSS for Gm16062:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr101863	Chr11:59700933-59700959 (+)	40 bp
Tssr101864	Chr11:59701113-59701125 (+)	213 bp
Tssr101865	Chr11:59701135-59701160 (+)	242 bp