Gm16025 Gene Detail

Summary

• Symbol
  Gm16025
• Name
  predicted gene 16025

• Feature Type
  lncRNA gene
• IDs
  MGI:3802144
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr1:85304450-85320336 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 43.46 cM

Strain
Comparison

• SNPs within 2kb
  42 from dbSNP Build 142
• Strain Annotations
  22

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3802144	lncRNA gene	Chr1:85304450-85320336 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	ENSMUSG00220044918	lncRNA gene	Chr1:81747117-81759492 (+)
AKR/J	ENSMUSG00220044896	lncRNA gene	Chr1:81640959-81656965 (-)
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215032070	lncRNA gene	Chr1:82457604-82466987 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005008093	lncRNA gene	Chr1:82066603-82076014 (+)
CAST/EiJ	ENSTCUG00005002299	lncRNA gene	Chr1:103931-127178 (+)
CAST/EiJ	ENSTCUG00005007965	lncRNA gene	Chr1:82108549-82118048 (-)
CBA/J	ENSMUSG00210012404	lncRNA gene	Chr1:82380339-82389704 (-)
DBA/2J	ENSMUSG00185018329	lncRNA gene	Chr1:85408085-85423877 (-)
DBA/2J	ENSMUSG00185017938	lncRNA gene	Chr1:83795694-83811618 (-)
DBA/2J	ENSMUSG00185016769	lncRNA gene	Chr1:83610746-83626635 (+)
DBA/2J	ENSMUSG00185017950	lncRNA gene	Chr1:84538097-84553798 (+)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000026333	lncRNA gene	Chr1:82219435-82221670 (-)
JF1/MsJ	ENSUMUG00000020575	lncRNA gene	Chr1:82573458-82589309 (-)
JF1/MsJ	ENSUMUG00000025426	lncRNA gene	Chr1:83219915-83235778 (+)
LP/J	ENSMUSG00230023119	lncRNA gene	Chr1:85351582-85367374 (-)
LP/J	ENSMUSG00230022257	lncRNA gene	Chr1:83548310-83564196 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225004704	lncRNA gene	Chr1:86792130-86808017 (+)
NZO/HlLtJ	ENSMUSG00225005085	lncRNA gene	Chr1:87719412-87735111 (+)
NZO/HlLtJ	ENSMUSG00225005302	lncRNA gene	Chr1:88589327-88605119 (-)
PWK/PhJ	ENSLUMG00010049056	lncRNA gene	Chr1:81953248-81954120 (-)
SPRET/EiJ	ENSMSPG00010046288	lncRNA gene	Chr1:84014457-84023949 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm16025
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm16025
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25

• Ensembl
  ENSMUSG00000089652 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089652	Ensembl Gene Model | MGI Sequence Detail	15887	C57BL/6J
transcript	ENSMUST00000161923	Ensembl | MGI Sequence Detail	2425	Not Applicable

References

• Summaries
  All 7

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm16025:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr137	Chr1:85304429-85304437 (+)	-17 bp
Tssr138	Chr1:85308155-85308156 (+)	3,706 bp