Gm16140 Gene Detail

Summary

• Symbol
  Gm16140
• Name
  predicted gene 16140

• Feature Type
  lncRNA gene
• IDs
  MGI:3802123
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:18959120-18961183 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 11.34 cM

Strain
Comparison

• SNPs within 2kb
  102 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3802123	lncRNA gene	Chr11:18959120-18961183 (+)
129S1/SvImJ	ENSMUSG00200022610	lncRNA gene	Chr11:15969197-15971256 (+)
A/J	ENSMUSG00195005320	lncRNA gene	Chr11:15797188-15799250 (+)
AKR/J	ENSMUSG00220003519	lncRNA gene	Chr11:15886562-15888624 (+)
BALB/cJ	ENSMUSG00180004076	lncRNA gene	Chr11:15794606-15796667 (+)
C3H/HeJ	ENSMUSG00175008046	lncRNA gene	Chr11:15833573-15835630 (+)
C57BL/6NJ	ENSMUSG00215003646	lncRNA gene	Chr11:15897914-15899970 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002574	antisense lncRNA gene	Chr11:14954993-14957043 (+)
CAST/EiJ	ENSTCUG00005007521	lncRNA gene	Chr11:15787218-15789265 (+)
CBA/J	ENSMUSG00210009579	lncRNA gene	Chr11:15810886-15812938 (+)
DBA/2J	ENSMUSG00185012208	lncRNA gene	Chr11:15925010-15927067 (+)
FVB/NJ	ENSMUSG00205005120	lncRNA gene	Chr11:15850175-15852230 (+)
JF1/MsJ	ENSUMUG00000006462	lncRNA gene	Chr11:16104164-16106217 (+)
LP/J	ENSMUSG00230004269	lncRNA gene	Chr11:16945102-16947163 (+)
NOD/ShiLtJ	ENSMUSG00190008859	lncRNA gene	Chr11:15920972-15923029 (+)
NZO/HlLtJ	ENSMUSG00225033020	lncRNA gene	Chr11:18961110-18963171 (+)
PWK/PhJ	ENSLUMG00010012120	lncRNA gene	Chr11:15762729-15764780 (+)
SPRET/EiJ	ENSMSPG00010018621	lncRNA gene	Chr11:16040618-16042665 (+)
WSB/EiJ	ENSIUOG00005010567	lncRNA gene	Chr11:15863701-15865756 (+)

Homology

• Gene Tree
  Gm16140
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm16140
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  8 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000084085 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084085	Ensembl Gene Model | MGI Sequence Detail	2064	C57BL/6J
transcript	ENSMUST00000117191	Ensembl | MGI Sequence Detail	1068	Not Applicable

References

• Summaries
  All 7

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6

TSS for Gm16140:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr3435	Chr11:18959079-18959098 (+)	-31 bp