Gm15998 MGI Mouse Gene Detail - MGI:3802094

Symbol

Gm15998
Name

predicted gene 15998
Synonyms

ENSMUSG00000074470

Feature Type

lncRNA gene
IDs

MGI:3802094
NCBI Gene: 100038411
Alliance

genome feature page

Sequence Map

Chr3:89224054-89227547 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 3, 39.06 cM
Mapping Data

1 experiment

SNPs within 2kb

78 from dbSNP Build 142
Strain Annotations

31

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3802094	lncRNA gene	Chr3:89222413-89227547 (+)
129S1/SvImJ	ENSMUSG00200040080	lncRNA gene	Chr3:86077989-86081458 (+)
129S1/SvImJ	ENSMUSG00200038872	protein coding gene	Chr3:86065172-86080219 (+)
A/J	ENSMUSG00195053685	lncRNA gene	Chr3:86092970-86096453 (+)
A/J	ENSMUSG00195049679	protein coding gene	Chr3:86080136-86094816 (+)
AKR/J	ENSMUSG00220052173	lncRNA gene	Chr3:86047542-86051025 (+)
AKR/J	ENSMUSG00220047433	protein coding gene	Chr3:86034709-86049388 (+)
BALB/cJ	ENSMUSG00180049763	lncRNA gene	Chr3:86175037-86178517 (+)
BALB/cJ	ENSMUSG00180047918	protein coding gene	Chr3:86162209-86177277 (+)
C3H/HeJ	ENSMUSG00175047918	lncRNA gene	Chr3:86025603-86029086 (+)
C3H/HeJ	ENSMUSG00175046926	protein coding gene	Chr3:86012764-86027449 (+)
C57BL/6NJ	ENSMUSG00215047626	protein coding gene	Chr3:86452920-86467969 (+)
C57BL/6NJ	ENSMUSG00215050372	lncRNA gene	Chr3:86465739-86469207 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003390	antisense lncRNA gene	Chr3:82045152-82048760 (+)
CAST/EiJ	ENSTCUG00005049317	lncRNA gene	Chr3:85541116-85544624 (+)
CBA/J	ENSMUSG00210048355	lncRNA gene	Chr3:86163248-86166731 (+)
CBA/J	ENSMUSG00210036424	protein coding gene	Chr3:86150414-86165094 (+)
DBA/2J	ENSMUSG00185053045	lncRNA gene	Chr3:86263512-86266986 (+)
DBA/2J	ENSMUSG00185051140	protein coding gene	Chr3:86250699-86265748 (+)
FVB/NJ	ENSMUSG00205033144	protein coding gene	Chr3:85074377-85089050 (+)
FVB/NJ	ENSMUSG00205051275	lncRNA gene	Chr3:85087204-85090687 (+)
JF1/MsJ	ENSUMUG00000051890	lncRNA gene	Chr3:85872030-85875500 (+)
LP/J	ENSMUSG00230031291	protein coding gene	Chr3:88286483-88301533 (+)
LP/J	ENSMUSG00230036488	lncRNA gene	Chr3:88299303-88302771 (+)
NOD/ShiLtJ	ENSMUSG00190035531	protein coding gene	Chr3:86535412-86550482 (+)
NOD/ShiLtJ	ENSMUSG00190050013	lncRNA gene	Chr3:86548260-86551718 (+)
NZO/HlLtJ	ENSMUSG00225006773	protein coding gene	Chr3:91041731-91056806 (+)
NZO/HlLtJ	ENSMUSG00225007725	lncRNA gene	Chr3:91054562-91058043 (+)
PWK/PhJ	ENSLUMG00010052418	lncRNA gene	Chr3:85913926-85917394 (+)
SPRET/EiJ	ENSMSPG00010051073	lncRNA gene	Chr3:86775649-86779262 (+)
WSB/EiJ	ENSIUOG00005050702	lncRNA gene	Chr3:86569748-86573241 (+)

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Gene Tree

Gm15998

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References

1 with disease annotations

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Phenotype Summary

4 phenotype references

All Mutations and Alleles

2
Chemically induced (other)

1
Radiation induced

1
Genomic Mutations

2 involving Gm15998
Find Mice (IMSR)

0 strains or lines available

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

597
cDNA Data

1

Tissue x Stage Matrix

Other Mouse Links

GEO

Expression Atlas

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All Sequences

38
RefSeq

1
UniProt

1

Ensembl

ENSMUSG00000086389 (Evidence)
NCBI Gene

100038411

			Length	Strain/Species	Flank
genomic	100038411	NCBI Gene Model \| MGI Sequence Detail	3494	C57BL/6J	± kb
transcript	AK140090	GenBank \| ENA \| DDBJ \| MGI Sequence Detail	1845	C57BL/6J
polypeptide	Q3USU7	UniProt \| EBI \| MGI Sequence Detail	169	Not Applicable

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UniProt

1 Sequence

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All nucleic 1

cDNA 1

Microarray probesets 1

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MGI:3642448

Summaries

All 15

Diseases 1

Phenotypes 4
Earliest

J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
Latest

J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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