Gm16008 Gene Detail

Summary

• Symbol
  Gm16008
• Name
  predicted gene 16008
• Synonyms
  Gm10560

• Feature Type
  lncRNA gene
• IDs
  MGI:3802048
  NCBI Gene: 100038526
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr4:156104885-156116119 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 87.72 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  598 from dbSNP Build 142
• Strain Annotations
  22

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3802048	lncRNA gene	Chr4:156092022-156116143 (-)
129S1/SvImJ	ENSMUSG00200019986	lncRNA gene	Chr4:147148853-147158257 (-)
A/J	ENSMUSG00195020800	lncRNA gene	Chr4:148814994-148824398 (-)
AKR/J	ENSMUSG00220027462	lncRNA gene	Chr4:148390324-148399730 (-)
BALB/cJ	ENSMUSG00180002704	lncRNA gene	Chr4:146469533-146479004 (-)
C3H/HeJ	ENSMUSG00175019596	lncRNA gene	Chr4:149770150-149779554 (-)
C57BL/6NJ	ENSMUSG00215008238	protein coding gene	Chr4:148627804-148639305 (-)
C57BL/6NJ	ENSMUSG00215028270	lncRNA gene	Chr4:148629600-148639255 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003621	antisense lncRNA gene	Chr4:145911758-145920857 (-)
CAST/EiJ	ENSTCUG00005035452	lncRNA gene	Chr4:152468548-152477875 (-)
CBA/J	ENSMUSG00210006212	lncRNA gene	Chr4:148428503-148437976 (-)
DBA/2J	ENSMUSG00185017081	lncRNA gene	Chr4:151986040-151995444 (-)
FVB/NJ	ENSMUSG00205016694	protein coding gene	Chr4:146888886-146900414 (-)
FVB/NJ	ENSMUSG00205022555	lncRNA gene	Chr4:146890682-146900364 (-)
JF1/MsJ	ENSUMUG00000000417	lncRNA gene	Chr4:155031200-155040614 (-)
LP/J	ENSMUSG00230026562	lncRNA gene	Chr4:158737110-158746524 (-)
NOD/ShiLtJ	ENSMUSG00190004147	lncRNA gene	Chr4:148094301-148103985 (-)
NOD/ShiLtJ	ENSMUSG00190003490	protein coding gene	Chr4:148092715-148104035 (-)
NZO/HlLtJ	ENSMUSG00225024732	lncRNA gene	Chr4:162708674-162718078 (-)
PWK/PhJ	ENSLUMG00010028268	lncRNA gene	Chr4:147282518-147291924 (-)
SPRET/EiJ	ENSMSPG00010026233	lncRNA gene	Chr4:149216498-149226268 (-)
WSB/EiJ	ENSIUOG00005006729	lncRNA gene	Chr4:146303412-146313091 (-)

Homology

• Gene Tree
  Gm16008
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  4
• Gene trapped
  4
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  48
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000087381 (Evidence)
• NCBI Gene
  100038526

Representative Sequences			Length	Strain/Species
genomic	100038526	NCBI Gene Model | MGI Sequence Detail	11235	C57BL/6J
transcript	NR_169176	RefSeq | MGI Sequence Detail	2238	C57BL/6
polypeptide	Q3V1W0	UniProt | EBI | MGI Sequence Detail	119	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 3

  cDNA 3

Other
Accession IDs

MGI:3641794

References

• Summaries
  All 14

  Phenotypes 4
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm16008:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr44998	Chr4:156116112-156116131 (-)	-3 bp
Tssr44997	Chr4:156116075-156116092 (-)	35 bp
Tssr44996	Chr4:156115205-156115221 (-)	906 bp
Tssr44995	Chr4:156115149-156115158 (-)	965 bp
Tssr44994	Chr4:156110663-156110682 (-)	5,446 bp