Gm16168 Gene Detail

Summary

• Symbol
  Gm16168
• Name
  predicted gene 16168

• Feature Type
  lncRNA gene
• IDs
  MGI:3802010
  NCBI Gene: 102639507
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr17:10712476-10788385 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 7.80 cM

Strain
Comparison

• SNPs within 2kb
  1695 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3802010	lncRNA gene	Chr17:10712476-10788385 (+)
129S1/SvImJ	ENSMUSG00200034970	lncRNA gene	Chr17:6959127-7032057 (+)
A/J	ENSMUSG00195024204	lncRNA gene	Chr17:7156817-7229759 (+)
AKR/J	ENSMUSG00220030383	lncRNA gene	Chr17:7210655-7283613 (+)
BALB/cJ	ENSMUSG00180029040	lncRNA gene	Chr17:6793683-6866631 (+)
C3H/HeJ	ENSMUSG00175037069	lncRNA gene	Chr17:6947130-7020065 (+)
C57BL/6NJ	ENSMUSG00215030795	lncRNA gene	Chr17:6983767-7056716 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002993	antisense lncRNA gene	Chr17:6346391-6421794 (-)
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210042148	lncRNA gene	Chr17:6613800-6686729 (+)
DBA/2J	ENSMUSG00185024349	lncRNA gene	Chr17:7706596-7779529 (+)
FVB/NJ	ENSMUSG00205010046	lncRNA gene	Chr17:7021971-7094925 (+)
JF1/MsJ	ENSUMUG00000040060	lncRNA gene	Chr17:7295932-7368560 (+)
LP/J	ENSMUSG00230034333	lncRNA gene	Chr17:9128967-9201930 (+)
NOD/ShiLtJ	ENSMUSG00190040126	lncRNA gene	Chr17:7128287-7201225 (+)
NZO/HlLtJ	ENSMUSG00225049168	lncRNA gene	Chr17:11047873-11120836 (+)
PWK/PhJ	ENSLUMG00010020189	lncRNA gene	Chr17:7122996-7195621 (+)
SPRET/EiJ	ENSMSPG00010041044	lncRNA gene	Chr17:6491026-6569900 (-)
WSB/EiJ	ENSIUOG00005015034	lncRNA gene	Chr17:7016577-7089523 (+)

Homology

• Gene Tree
  Gm16168
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  99 phenotype references
  

• All Mutations and Alleles
  5
• Gene trapped
  4
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm16168
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  3

• Ensembl
  ENSMUSG00000089941 (Evidence)
• NCBI Gene
  102639507

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089941	Ensembl Gene Model | MGI Sequence Detail	75910	C57BL/6J
transcript	ENSMUST00000161091	Ensembl | MGI Sequence Detail	1359	Not Applicable

References

• Summaries
  All 105

  Phenotypes 99
• Earliest
  J:13141 SIDMAN RL, et al., MUTANT MICE (QUAKING AND JIMPY) WITH DEFICIENT MYELINATION IN THE CENTRAL NERVOUS SYSTEM. Science. 1964 Apr 17;144:309-11
• Latest
  J:312601 Ogorek M, et al., Atp7a and Atp7b regulate copper homeostasis in developing male germ cells in mice. Metallomics. 2017 Sep 20;9(9):1288-1303

TSS for Gm16168:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr142575	Chr17:10715260-10715271 (+)	2,790 bp
Tssr142576	Chr17:10715300-10715325 (+)	2,837 bp
Tssr142577	Chr17:10715343-10715357 (+)	2,874 bp
Tssr142578	Chr17:10715363-10715370 (+)	2,891 bp