Gm15964 Gene Detail

Summary

• Symbol
  Gm15964
• Name
  predicted gene 15964

• Feature Type
  lncRNA gene
• IDs
  MGI:3802003
  NCBI Gene: 100503130
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr16:91408356-91431505 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 53.16 cM

Strain
Comparison

• SNPs within 2kb
  782 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3802003	lncRNA gene	Chr16:91408356-91431505 (+)
129S1/SvImJ	ENSMUSG00200038753	lncRNA gene	Chr16:88330547-88342940 (+)
A/J	ENSMUSG00195029263	lncRNA gene	Chr16:88091957-88104345 (+)
AKR/J	ENSMUSG00220016302	lncRNA gene	Chr16:88285553-88297946 (+)
BALB/cJ	ENSMUSG00180015352	lncRNA gene	Chr16:88166048-88178436 (+)
C3H/HeJ	ENSMUSG00175017271	lncRNA gene	Chr16:88503393-88515781 (+)
C57BL/6NJ	ENSMUSG00215035137	lncRNA gene	Chr16:88296852-88309245 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013463	unclassified non-coding RNA gene	Chr16:86000664-86013782 (+)
CAST/EiJ	ENSTCUG00005020025	lncRNA gene	Chr16:87841681-87854373 (+)
CBA/J	ENSMUSG00210044430	lncRNA gene	Chr16:88402434-88415083 (+)
DBA/2J	ENSMUSG00185034477	lncRNA gene	Chr16:88354029-88366417 (+)
FVB/NJ	ENSMUSG00205028520	lncRNA gene	Chr16:88124976-88137364 (+)
JF1/MsJ	ENSUMUG00000042797	lncRNA gene	Chr16:88490330-88502978 (+)
LP/J	ENSMUSG00230035118	lncRNA gene	Chr16:90877324-90889717 (+)
NOD/ShiLtJ	ENSMUSG00190028128	lncRNA gene	Chr16:88321710-88334103 (+)
NZO/HlLtJ	ENSMUSG00225031246	lncRNA gene	Chr16:93999987-94012375 (+)
PWK/PhJ	ENSLUMG00010013798	lncRNA gene	Chr16:88117932-88130538 (+)
SPRET/EiJ	ENSMSPG00010030331	lncRNA gene	Chr16:89264543-89276955 (+)
WSB/EiJ	ENSIUOG00005020854	lncRNA gene	Chr16:88229455-88241848 (+)

Homology

• Gene Tree
  Gm15964
  

Human Diseases

• References
  4 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  73 phenotype references
  

• All Mutations and Alleles
  11
• Gene trapped
  3
• Spontaneous
  1
• Targeted
  6
• Genomic Mutations
  8 involving Gm15964
• Find Mice (IMSR)
  5 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24

• Ensembl
  ENSMUSG00000085337 (Evidence)
• NCBI Gene
  100503130

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085337	Ensembl Gene Model | MGI Sequence Detail	23150	C57BL/6J
transcript	ENSMUST00000138207	Ensembl | MGI Sequence Detail	2745	Not Applicable

References

• Summaries
  All 78

  Diseases 4

  Phenotypes 73
• Earliest
  J:42265 Huang TT, et al., Superoxide-mediated cytotoxicity in superoxide dismutase-deficient fetal fibroblasts. Arch Biochem Biophys. 1997 Aug 15;344(2):424-32
• Latest
  J:385727 Harada K, et al., Preventing Differentiation Towards Primitive Macrophages in Stem Cells With Down Syndrome. Immunology. 2026 Mar;177(3):596-612

TSS for Gm15964:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr139421	Chr16:91408379-91408425 (+)	46 bp
Tssr4959	Chr16:91430708-91430755 (+)	22,376 bp