Gm16240 Gene Detail

Summary

• Symbol
  Gm16240
• Name
  predicted gene 16240

• Feature Type
  lncRNA gene
• IDs
  MGI:3801994
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:76128999-76130694 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 38.78 cM

Strain
Comparison

• SNPs within 2kb
  12 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3801994	lncRNA gene	Chr10:76128999-76130694 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002869	antisense lncRNA gene	Chr10:76521393-76523088 (+)
A/J	MGP_AJ_G0002846	antisense lncRNA gene	Chr10:73884312-73886007 (+)
AKR/J	MGP_AKRJ_G0002826	antisense lncRNA gene	Chr10:75873875-75875570 (+)
BALB/cJ	MGP_BALBcJ_G0002833	antisense lncRNA gene	Chr10:74086668-74088363 (+)
C3H/HeJ	MGP_C3HHeJ_G0002790	antisense lncRNA gene	Chr10:75943421-75945116 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002976	antisense lncRNA gene	Chr10:79227714-79229409 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002519	antisense lncRNA gene	Chr10:70335650-70337380 (+)
CAST/EiJ	MGP_CASTEiJ_G0002762	antisense lncRNA gene	Chr10:76259554-76261269 (+)
CBA/J	MGP_CBAJ_G0002785	antisense lncRNA gene	Chr10:82327436-82329131 (+)
DBA/2J	MGP_DBA2J_G0002792	antisense lncRNA gene	Chr10:73195600-73197295 (+)
FVB/NJ	MGP_FVBNJ_G0002812	antisense lncRNA gene	Chr10:72348705-72350400 (+)
LP/J	MGP_LPJ_G0002868	antisense lncRNA gene	Chr10:77034458-77036153 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002802	antisense lncRNA gene	Chr10:84392964-84394659 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002979	antisense lncRNA gene	Chr10:75925683-75927378 (+)
PWK/PhJ	MGP_PWKPhJ_G0002720	antisense lncRNA gene	Chr10:73025015-73026702 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002669	antisense lncRNA gene	Chr10:75155000-75156645 (+)
WSB/EiJ	MGP_WSBEiJ_G0002791	antisense lncRNA gene	Chr10:75903694-75905409 (+)

Homology

• Gene Tree
  Gm16240
  

Human Diseases

• References
  2 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  28 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  1
• Targeted
  4
• Genomic Mutations
  5 involving Gm16240
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000089711 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089711	Ensembl Gene Model | MGI Sequence Detail	1696	C57BL/6J
transcript	ENSMUST00000161924	Ensembl | MGI Sequence Detail	614	Not Applicable

References

• Summaries
  All 32

  Diseases 2

  Phenotypes 28
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:341136 Muza PM, et al., Cognitive impairments in a Down syndrome model with abnormal hippocampal and prefrontal dynamics and cytoarchitecture. iScience. 2023 Feb 17;26(2):106073

TSS for Gm16240:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr94170	Chr10:76128982-76128997 (+)	-9 bp