Gm15990 Gene Detail

Summary

• Symbol
  Gm15990
• Name
  predicted gene 15990

• Feature Type
  lncRNA gene
• IDs
  MGI:3801993
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:85961691-85965718 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 42.05 cM

Strain
Comparison

• SNPs within 2kb
  221 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3801993	lncRNA gene	Chr10:85961691-85965718 (+)
129S1/SvImJ	ENSMUSG00200029810	lncRNA gene	Chr10:82458368-82462395 (+)
A/J	ENSMUSG00195022099	lncRNA gene	Chr10:82905601-82909628 (+)
AKR/J	ENSMUSG00220022150	lncRNA gene	Chr10:82507897-82511924 (+)
BALB/cJ	ENSMUSG00180035364	lncRNA gene	Chr10:82908714-82912741 (+)
C3H/HeJ	ENSMUSG00175024574	lncRNA gene	Chr10:82784527-82788554 (+)
C57BL/6NJ	ENSMUSG00215033554	lncRNA gene	Chr10:82453007-82457034 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002538	antisense lncRNA gene	Chr10:80001112-80005199 (+)
CAST/EiJ	ENSTCUG00005038037	lncRNA gene	Chr10:82214322-82218345 (+)
CBA/J	ENSMUSG00210036774	lncRNA gene	Chr10:82635268-82639295 (+)
DBA/2J	ENSMUSG00185043150	lncRNA gene	Chr10:82848901-82852927 (+)
FVB/NJ	ENSMUSG00205022639	lncRNA gene	Chr10:82512419-82516445 (+)
JF1/MsJ	ENSUMUG00000028829	lncRNA gene	Chr10:84217290-84221313 (+)
LP/J	ENSMUSG00230018440	lncRNA gene	Chr10:84741566-84745593 (+)
NOD/ShiLtJ	ENSMUSG00190019347	lncRNA gene	Chr10:82891214-82895241 (+)
NZO/HlLtJ	ENSMUSG00225053741	lncRNA gene	Chr10:89014494-89018521 (+)
PWK/PhJ	ENSLUMG00010023531	lncRNA gene	Chr10:82496482-82500528 (+)
SPRET/EiJ	ENSMSPG00010035682	lncRNA gene	Chr10:83956747-83960756 (+)
WSB/EiJ	ENSIUOG00005037878	lncRNA gene	Chr10:82588811-82592838 (+)

Homology

• Gene Tree
  Gm15990
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm15990
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000087256 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087256	Ensembl Gene Model | MGI Sequence Detail	4028	C57BL/6J
transcript	ENSMUST00000132223	Ensembl | MGI Sequence Detail	3321	Not Applicable

References

• Summaries
  All 10

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Gm15990:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr94956	Chr10:85960274-85960307 (+)	-1,400 bp