Gm16063 Gene Detail

Summary

• Symbol
  Gm16063
• Name
  predicted gene 16063

• Feature Type
  lncRNA gene
• IDs
  MGI:3801955
  NCBI Gene: 330183
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:119764007-119772527 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 60.32 cM

Strain
Comparison

• SNPs within 2kb
  367 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3801955	lncRNA gene	Chr5:119763294-119805755 (+)
129S1/SvImJ	ENSMUSG00200030856	lncRNA gene	Chr5:113512034-113520508 (+)
A/J	ENSMUSG00195012257	lncRNA gene	Chr5:113032992-113041466 (+)
AKR/J	ENSMUSG00220047460	lncRNA gene	Chr5:112524760-112533303 (+)
BALB/cJ	ENSMUSG00180038455	lncRNA gene	Chr5:113147547-113156022 (+)
C3H/HeJ	ENSMUSG00175030564	lncRNA gene	Chr5:115142863-115151396 (+)
C57BL/6NJ	ENSMUSG00215043460	lncRNA gene	Chr5:113170295-113178819 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006179	lincRNA gene	Chr5:112583709-112592210 (+)
CAST/EiJ	ENSTCUG00005041672	lncRNA gene	Chr5:112354748-112363252 (+)
CBA/J	ENSMUSG00210010595	lncRNA gene	Chr5:113893865-113902388 (+)
DBA/2J	ENSMUSG00185053971	lncRNA gene	Chr5:116956988-116965466 (+)
FVB/NJ	ENSMUSG00205044624	lncRNA gene	Chr5:112809175-112817700 (+)
JF1/MsJ	ENSUMUG00000054646	lncRNA gene	Chr5:119795996-119804527 (+)
LP/J	ENSMUSG00230049251	lncRNA gene	Chr5:121034284-121042758 (+)
NOD/ShiLtJ	ENSMUSG00190048002	lncRNA gene	Chr5:112843406-112851928 (+)
NZO/HlLtJ	ENSMUSG00225016246	lncRNA gene	Chr5:128711284-128719801 (+)
PWK/PhJ	ENSLUMG00010046095	lncRNA gene	Chr5:111696569-111705109 (+)
SPRET/EiJ	ENSMSPG00010044584	lncRNA gene	Chr5:115002997-115011501 (+)
WSB/EiJ	ENSIUOG00005019495	lncRNA gene	Chr5:115532540-115541060 (+)

Homology

• Gene Tree
  Gm16063
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  14
• Chemically induced (other)
  1
• Gene trapped
  12
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm16063
• Find Mice (IMSR)
  9 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  43
• RefSeq
  1

• Ensembl
  ENSMUSG00000085708 (Evidence)
• NCBI Gene
  330183

Representative Sequences			Length	Strain/Species
genomic	330183	NCBI Gene Model | MGI Sequence Detail	8521	C57BL/6J
transcript	NR_046178	RefSeq | MGI Sequence Detail	1699	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 17

  Phenotypes 8
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm16063:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr48450	Chr5:119764004-119764031 (+)	11 bp