Gm16159 MGI Mouse Gene Detail - MGI:3801949

Symbol

Gm16159
Name

predicted gene 16159

Feature Type

lncRNA gene
IDs

MGI:3801949
NCBI Gene: 102633315
Alliance

gene page
Transcription Start Sites

2 TSS

Sequence Map

Chr8:26038689-26046099 bp, - strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 8, 14.17 cM

SNPs within 2kb

31 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3801949	lncRNA gene	Chr8:26038677-26046099 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015709	unclassified non-coding RNA gene	Chr8:23595134-23603722 (-)
A/J	MGP_AJ_G0015687	unclassified non-coding RNA gene	Chr8:22748191-22756176 (-)
AKR/J	MGP_AKRJ_G0015650	unclassified non-coding RNA gene	Chr8:23495293-23502719 (-)
BALB/cJ	MGP_BALBcJ_G0015648	unclassified non-coding RNA gene	Chr8:22895972-22903350 (-)
C3H/HeJ	MGP_C3HHeJ_G0015470	unclassified non-coding RNA gene	Chr8:23714271-23722724 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0016103	unclassified non-coding RNA gene	Chr8:24562094-24569511 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013832	unclassified non-coding RNA gene	Chr8:20021283-20028489 (-)
CAST/EiJ	MGP_CASTEiJ_G0015025	unclassified non-coding RNA gene	Chr8:23147917-23156229 (-)
CBA/J	MGP_CBAJ_G0015451	unclassified non-coding RNA gene	Chr8:25515442-25522867 (-)
DBA/2J	MGP_DBA2J_G0015547	unclassified non-coding RNA gene	Chr8:22721167-22728510 (-)
FVB/NJ	MGP_FVBNJ_G0015553	unclassified non-coding RNA gene	Chr8:22527546-22534825 (-)
LP/J	MGP_LPJ_G0015627	unclassified non-coding RNA gene	Chr8:23582714-23591207 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015575	unclassified non-coding RNA gene	Chr8:24977648-24985035 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016145	unclassified non-coding RNA gene	Chr8:23436958-23444324 (-)
PWK/PhJ	MGP_PWKPhJ_G0014807	unclassified non-coding RNA gene	Chr8:22356083-22363549 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014596	unclassified non-coding RNA gene	Chr8:22802140-22809438 (-)
WSB/EiJ	MGP_WSBEiJ_G0015130	unclassified non-coding RNA gene	Chr8:23655424-23662843 (-)

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Gene Tree

Gm16159

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Phenotype Summary

2 phenotype references

All Mutations and Alleles

6
Gene trapped

6
Find Mice (IMSR)

0 strains or lines available

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

706
cDNA Data

3

Tissue x Stage Matrix

Other Mouse Links

Expression Atlas

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All Sequences

24
RefSeq

1

Ensembl

ENSMUSG00000086134 (Evidence)
NCBI Gene

102633315

Representative Sequences				Length	Strain/Species	Flank
	genomic	102633315	NCBI Gene Model \| MGI Sequence Detail	7411	C57BL/6J	± kb
	transcript	NR_110510	RefSeq \| MGI Sequence Detail	935	ZRU/MplStud

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All nucleic 3

cDNA 3

Summaries

All 10

Phenotypes 2
Earliest

J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm16159:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr80714	Chr8:26046177-26046200 (-)	-90 bp
Tssr80713	Chr8:26046150-26046168 (-)	-60 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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