Tent2-ps1 Pseudogene Detail

Summary

• Symbol
  Tent2-ps1
• Name
  terminal nucleotidyltransferase 2, pseudogene 1
• Synonyms
  Gm15975, Gm8085

• Feature Type
  pseudogene
• IDs
  MGI:3801944
  NCBI Gene: 100417530
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr5:55781532-55782933 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 30.80 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  187 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3801944	pseudogene	Chr5:55781368-55783320 (+)
129S1/SvImJ	ENSMUSG00200000173	pseudogene	Chr5:51333423-51334824 (+)
A/J	ENSMUSG00195000541	pseudogene	Chr5:50719640-50721041 (+)
AKR/J	ENSMUSG00220007182	pseudogene	Chr5:50795229-50796630 (+)
BALB/cJ	ENSMUSG00180006827	pseudogene	Chr5:50481533-50482934 (+)
C3H/HeJ	ENSMUSG00175001799	pseudogene	Chr5:52520312-52521713 (+)
C57BL/6NJ	ENSMUSG00215002886	pseudogene	Chr5:51277498-51278899 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005000492	pseudogene	Chr5:50640822-50642251 (+)
CBA/J	ENSMUSG00210000250	pseudogene	Chr5:51478925-51480326 (+)
DBA/2J	ENSMUSG00185000192	pseudogene	Chr5:53341505-53342906 (+)
FVB/NJ	ENSMUSG00205003040	pseudogene	Chr5:50309573-50310974 (+)
JF1/MsJ	ENSUMUG00000001100	pseudogene	Chr5:57955464-57956907 (+)
LP/J	ENSMUSG00230010660	pseudogene	Chr5:58009255-58010656 (+)
NOD/ShiLtJ	ENSMUSG00190000856	pseudogene	Chr5:50394319-50395720 (+)
NZO/HlLtJ	ENSMUSG00225002779	pseudogene	Chr5:63132014-63133415 (+)
PWK/PhJ	ENSLUMG00010004558	pseudogene	Chr5:50562318-50563761 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005000120	pseudogene	Chr5:53380894-53382339 (+)

Homology

• Gene Tree
  Tent2-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Spontaneous
  1
• Genomic Mutations
  3 involving Tent2-ps1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  2

• Ensembl
  ENSMUSG00000083902 (Evidence)
• NCBI Gene
  100417530

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083902	Ensembl Gene Model | MGI Sequence Detail	1402	C57BL/6J
transcript	ENSMUST00000122385	Ensembl | MGI Sequence Detail	1402	Not Applicable

Other
Accession IDs

MGI:3645949, MGI:6454714

References

• Summaries
  All 11

  Phenotypes 4
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Tent2-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr46278	Chr5:55781922-55781949 (+)	404 bp
Tssr46279	Chr5:55782273-55782295 (+)	752 bp