Gm15841 Gene Detail

Summary

• Symbol
  Gm15841
• Name
  predicted gene 15841

• Feature Type
  lncRNA gene
• IDs
  MGI:3801860
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:74941530-74946812 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 38.54 cM

Strain
Comparison

• SNPs within 2kb
  178 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3801860	lncRNA gene	Chr1:74941530-74946812 (+)
129S1/SvImJ	ENSMUSG00200035266	lncRNA gene	Chr1:72601587-72606869 (+)
A/J	ENSMUSG00195010439	lncRNA gene	Chr1:72026439-72031739 (+)
AKR/J	ENSMUSG00220010438	lncRNA gene	Chr1:72171573-72176841 (+)
BALB/cJ	ENSMUSG00180021237	lncRNA gene	Chr1:72288300-72293587 (+)
C3H/HeJ	ENSMUSG00175018274	lncRNA gene	Chr1:72426793-72432095 (+)
C57BL/6NJ	ENSMUSG00215030959	lncRNA gene	Chr1:72333644-72338929 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002355	antisense lncRNA gene	Chr1:68448335-68453777 (+)
CAST/EiJ	ENSTCUG00005028633	lncRNA gene	Chr1:72049393-72054690 (+)
CBA/J	ENSMUSG00210043762	lncRNA gene	Chr1:72110519-72115797 (+)
DBA/2J	ENSMUSG00185032049	lncRNA gene	Chr1:73204998-73210296 (+)
FVB/NJ	ENSMUSG00205038971	lncRNA gene	Chr1:71783229-71788517 (+)
JF1/MsJ	ENSUMUG00000005877	lncRNA gene	Chr1:72100438-72105778 (+)
LP/J	ENSMUSG00230013990	lncRNA gene	Chr1:73194712-73199992 (+)
NOD/ShiLtJ	ENSMUSG00190041014	lncRNA gene	Chr1:72336750-72342026 (+)
NZO/HlLtJ	ENSMUSG00225040732	lncRNA gene	Chr1:76409842-76415120 (+)
PWK/PhJ	ENSLUMG00010013639	lncRNA gene	Chr1:71682226-71687537 (+)
SPRET/EiJ	ENSMSPG00010021116	lncRNA gene	Chr1:73771216-73776446 (+)
WSB/EiJ	ENSIUOG00005013841	lncRNA gene	Chr1:71958223-71963512 (+)

Homology

• Gene Tree
  Gm15841
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  2
• Genomic Mutations
  3 involving Gm15841
• Find Mice (IMSR)
  3 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000089653 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089653	Ensembl Gene Model | MGI Sequence Detail	5283	C57BL/6J
transcript	ENSMUST00000160540	Ensembl | MGI Sequence Detail	517	Not Applicable

References

• Summaries
  All 14

  Phenotypes 9
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:41878 Zoltewicz JS, et al., oto is a homeotic locus with a role in anteroposterior development that is partially redundant with Lim1. Development. 1999 Nov;126(22):5085-95