Gm16048 Gene Detail

Summary

• Symbol
  Gm16048
• Name
  predicted gene 16048

• Feature Type
  lncRNA gene
• IDs
  MGI:3801855
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:90358890-90364402 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 39.23 cM

Strain
Comparison

• SNPs within 2kb
  198 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3801855	lncRNA gene	Chr3:90358890-90364402 (+)
129S1/SvImJ	ENSMUSG00200039772	lncRNA gene	Chr3:87214265-87219947 (+)
A/J	ENSMUSG00195053975	lncRNA gene	Chr3:87229434-87235109 (+)
AKR/J	ENSMUSG00220052248	lncRNA gene	Chr3:87192937-87198621 (+)
BALB/cJ	ENSMUSG00180050313	lncRNA gene	Chr3:87322109-87327697 (+)
C3H/HeJ	ENSMUSG00175048585	lncRNA gene	Chr3:87161953-87167624 (+)
C57BL/6NJ	ENSMUSG00215050210	lncRNA gene	Chr3:87602021-87607699 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003395	antisense lncRNA gene	Chr3:83232952-83239233 (+)
CAST/EiJ	ENSTCUG00005048777	lncRNA gene	Chr3:86683729-86689578 (+)
CBA/J	ENSMUSG00210048423	lncRNA gene	Chr3:87299630-87305306 (+)
DBA/2J	ENSMUSG00185053588	lncRNA gene	Chr3:87409162-87414808 (+)
FVB/NJ	ENSMUSG00205050404	lncRNA gene	Chr3:86223210-86228889 (+)
JF1/MsJ	ENSUMUG00000052664	lncRNA gene	Chr3:87025400-87031235 (+)
LP/J	ENSMUSG00230035888	lncRNA gene	Chr3:89435483-89441163 (+)
NOD/ShiLtJ	ENSMUSG00190051124	lncRNA gene	Chr3:87695053-87700674 (+)
NZO/HlLtJ	ENSMUSG00225012531	lncRNA gene	Chr3:92193212-92198850 (+)
PWK/PhJ	ENSLUMG00010052358	lncRNA gene	Chr3:87058355-87064195 (+)
SPRET/EiJ	ENSMSPG00010050729	lncRNA gene	Chr3:87936157-87942165 (+)
WSB/EiJ	ENSIUOG00005050709	lncRNA gene	Chr3:87714949-87720596 (+)

Homology

• Gene Tree
  Gm16048
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  62
• Chemically induced (other)
  1
• Gene trapped
  61
• Genomic Mutations
  1 involving Gm16048
• Find Mice (IMSR)
  36 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000087411 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087411	Ensembl Gene Model | MGI Sequence Detail	5513	C57BL/6J
transcript	ENSMUST00000134250	Ensembl | MGI Sequence Detail	663	Not Applicable

References

• Summaries
  All 10

  Phenotypes 5
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm16048:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr30202	Chr3:90358260-90358274 (+)	-623 bp