Gm15843 Pseudogene Detail

Summary

• Symbol
  Gm15843
• Name
  predicted gene 15843

• Feature Type
  pseudogene
• IDs
  MGI:3801845
  NCBI Gene: 100416317
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:72498658-72499186 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 36.58 cM

Strain
Comparison

• SNPs within 2kb
  115 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3801845	pseudogene	Chr1:72498623-72499200 (+)
129S1/SvImJ	ENSMUSG00200004975	pseudogene	Chr1:70157139-70157667 (+)
A/J	ENSMUSG00195032382	pseudogene	Chr1:69574612-69575140 (+)
AKR/J	ENSMUSG00220039207	pseudogene	Chr1:69726938-69727466 (+)
BALB/cJ	ENSMUSG00180033010	pseudogene	Chr1:69839455-69839983 (+)
C3H/HeJ	ENSMUSG00175000932	pseudogene	Chr1:69969947-69970475 (+)
C57BL/6NJ	ENSMUSG00215026301	pseudogene	Chr1:69885276-69885804 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005021968	pseudogene	Chr1:69637157-69637685 (+)
CBA/J	ENSMUSG00210003301	pseudogene	Chr1:69667466-69667994 (+)
DBA/2J	ENSMUSG00185005285	pseudogene	Chr1:70758001-70758529 (+)
FVB/NJ	ENSMUSG00205015397	pseudogene	Chr1:69394075-69394603 (+)
JF1/MsJ	ENSUMUG00000004220	pseudogene	Chr1:69673425-69673953 (+)
LP/J	ENSMUSG00230002967	pseudogene	Chr1:70752237-70752765 (+)
NOD/ShiLtJ	ENSMUSG00190014537	pseudogene	Chr1:69884274-69884802 (+)
NZO/HlLtJ	ENSMUSG00225040673	pseudogene	Chr1:73967333-73967861 (+)
PWK/PhJ	ENSLUMG00010007802	pseudogene	Chr1:69264904-69265432 (+)
SPRET/EiJ	ENSMSPG00010019207	pseudogene	Chr1:71347792-71348321 (+)
WSB/EiJ	ENSIUOG00005029110	pseudogene	Chr1:69535456-69535984 (+)

Homology

• Gene Tree
  Gm15843
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm15843
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000085812 (Evidence)
• NCBI Gene
  100416317

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085812	Ensembl Gene Model | MGI Sequence Detail	529	C57BL/6J
transcript	ENSMUST00000146593	Ensembl | MGI Sequence Detail	529	Not Applicable

References

• Summaries
  All 10

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm15843:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr7305	Chr1:72498617-72498622 (+)	-38 bp