Gm15904 Gene Detail

Summary

• Symbol
  Gm15904
• Name
  predicted gene 15904

• Feature Type
  lncRNA gene
• IDs
  MGI:3801803
  NCBI Gene: 105244696
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:128829770-128833992 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 62.50 cM

Strain
Comparison

• SNPs within 2kb
  258 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3801803	lncRNA gene	Chr4:128829756-128834014 (+)
129S1/SvImJ	ENSMUSG00200021058	lncRNA gene	Chr4:122265002-122269207 (+)
A/J	ENSMUSG00195043880	lncRNA gene	Chr4:123605472-123609662 (+)
AKR/J	ENSMUSG00220047633	lncRNA gene	Chr4:122596322-122600512 (+)
BALB/cJ	ENSMUSG00180046668	lncRNA gene	Chr4:121239153-121243343 (+)
C3H/HeJ	ENSMUSG00175027198	lncRNA gene	Chr4:122251779-122255969 (+)
C57BL/6NJ	ENSMUSG00215052214	lncRNA gene	Chr4:123752611-123756801 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003564	antisense lncRNA gene	Chr4:118740485-118744587 (+)
CAST/EiJ	ENSTCUG00005048435	lncRNA gene	Chr4:123134546-123138812 (+)
CBA/J	ENSMUSG00210053916	lncRNA gene	Chr4:121880648-121884838 (+)
DBA/2J	ENSMUSG00185052972	lncRNA gene	Chr4:123413207-123417397 (+)
FVB/NJ	ENSMUSG00205028647	lncRNA gene	Chr4:121638882-121643039 (+)
JF1/MsJ	ENSUMUG00000046190	lncRNA gene	Chr4:124056248-124060341 (+)
LP/J	ENSMUSG00230039376	lncRNA gene	Chr4:127202507-127206712 (+)
NOD/ShiLtJ	ENSMUSG00190048831	lncRNA gene	Chr4:121638932-121643090 (+)
NZO/HlLtJ	ENSMUSG00225026773	lncRNA gene	Chr4:133123857-133128047 (+)
PWK/PhJ	ENSLUMG00010051172	lncRNA gene	Chr4:121097602-121101789 (+)
SPRET/EiJ	ENSMSPG00010044480	lncRNA gene	Chr4:123175392-123179557 (+)
WSB/EiJ	ENSIUOG00005047364	lncRNA gene	Chr4:121496337-121500541 (+)

Homology

• Gene Tree
  Gm15904
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  2
• Gene trapped
  1
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Gm15904
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  1

• Ensembl
  ENSMUSG00000085961 (Evidence)
• NCBI Gene
  105244696

Representative Sequences			Length	Strain/Species
genomic	105244696	NCBI Gene Model | MGI Sequence Detail	4223	C57BL/6J
transcript	XR_868179	RefSeq | MGI Sequence Detail	419	C57BL/6J

References

• Summaries
  All 14

  Phenotypes 7
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12

TSS for Gm15904:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr39086	Chr4:128829792-128829805 (+)	29 bp