Gm15882 Gene Detail

Summary

• Symbol
  Gm15882
• Name
  predicted gene 15882

• Feature Type
  lncRNA gene
• IDs
  MGI:3801770
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:58976328-58977360 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 30.75 cM

Strain
Comparison

• SNPs within 2kb
  20 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3801770	lncRNA gene	Chr8:58976328-58977360 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004559	antisense lncRNA gene	Chr8:58304203-58305231 (+)
A/J	MGP_AJ_G0004539	antisense lncRNA gene	Chr8:55832512-55833544 (+)
AKR/J	MGP_AKRJ_G0004523	antisense lncRNA gene	Chr8:57464129-57465161 (+)
BALB/cJ	MGP_BALBcJ_G0004524	antisense lncRNA gene	Chr8:56123235-56124267 (+)
C3H/HeJ	MGP_C3HHeJ_G0004473	antisense lncRNA gene	Chr8:58142224-58143256 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004674	antisense lncRNA gene	Chr8:60500592-60501624 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004126	antisense lncRNA gene	Chr8:51309958-51310989 (+)
CAST/EiJ	MGP_CASTEiJ_G0004433	antisense lncRNA gene	Chr8:57543699-57544731 (+)
CBA/J	MGP_CBAJ_G0004467	antisense lncRNA gene	Chr8:62742529-62743561 (+)
DBA/2J	MGP_DBA2J_G0004483	antisense lncRNA gene	Chr8:55602533-55603565 (+)
FVB/NJ	MGP_FVBNJ_G0004499	antisense lncRNA gene	Chr8:54957787-54958819 (+)
LP/J	MGP_LPJ_G0004563	antisense lncRNA gene	Chr8:58289926-58290958 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004488	antisense lncRNA gene	Chr8:64437585-64438617 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004673	antisense lncRNA gene	Chr8:57735425-57736457 (+)
PWK/PhJ	MGP_PWKPhJ_G0004385	antisense lncRNA gene	Chr8:54946182-54947214 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004327	antisense lncRNA gene	Chr8:56631613-56632630 (+)
WSB/EiJ	MGP_WSBEiJ_G0004472	antisense lncRNA gene	Chr8:58006750-58007778 (+)

Homology

• Gene Tree
  Gm15882
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm15882
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000090003 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090003	Ensembl Gene Model | MGI Sequence Detail	1033	C57BL/6J
transcript	ENSMUST00000161344	Ensembl | MGI Sequence Detail	855	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm15882:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr77440	Chr8:58976310-58976348 (+)	1 bp