Gm15886 Gene Detail

Summary

• Symbol
  Gm15886
• Name
  predicted gene 15886

• Feature Type
  lncRNA gene
• IDs
  MGI:3801744
  NCBI Gene: 102637354
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr3:103679189-103684541 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 45.52 cM

Strain
Comparison

• SNPs within 2kb
  137 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3801744	lncRNA gene	Chr3:103679189-103696723 (+)
129S1/SvImJ	ENSMUSG00200046479	lncRNA gene	Chr3:100287484-100304716 (+)
A/J	ENSMUSG00195049133	lncRNA gene	Chr3:100701002-100718239 (+)
AKR/J	ENSMUSG00220042699	lncRNA gene	Chr3:99060958-99078190 (+)
BALB/cJ	ENSMUSG00180042619	lncRNA gene	Chr3:100629127-100646321 (+)
C3H/HeJ	ENSMUSG00175032293	lncRNA gene	Chr3:100183351-100200579 (+)
C57BL/6NJ	ENSMUSG00215036582	lncRNA gene	Chr3:100949170-100966618 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003418	antisense lncRNA gene	Chr3:97841670-97859222 (+)
CAST/EiJ	ENSTCUG00005021107	lncRNA gene	Chr3:100903153-100920372 (+)
CBA/J	ENSMUSG00210051446	lncRNA gene	Chr3:100805356-100822590 (+)
DBA/2J	ENSMUSG00185022126	lncRNA gene	Chr3:101285336-101302787 (+)
FVB/NJ	ENSMUSG00205029072	lncRNA gene	Chr3:99866031-99883264 (+)
JF1/MsJ	ENSUMUG00000049184	lncRNA gene	Chr3:100026697-100043936 (+)
LP/J	ENSMUSG00230020954	lncRNA gene	Chr3:103215822-103233052 (+)
NOD/ShiLtJ	ENSMUSG00190050234	lncRNA gene	Chr3:101481149-101498341 (+)
NZO/HlLtJ	ENSMUSG00225020546	lncRNA gene	Chr3:105682886-105700076 (+)
PWK/PhJ	ENSLUMG00010032812	lncRNA gene	Chr3:100091162-100108244 (+)
SPRET/EiJ	ENSMSPG00010047527	lncRNA gene	Chr3:100312723-100329655 (+)
WSB/EiJ	ENSIUOG00005034721	lncRNA gene	Chr3:100820397-100837844 (+)

Homology

• Gene Tree
  Gm15886
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  2
• Genomic Mutations
  1 involving Gm15886
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  8 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  41
• RefSeq
  3

• Ensembl
  ENSMUSG00000085754 (Evidence)
• NCBI Gene
  102637354

Representative Sequences			Length	Strain/Species
genomic	102637354	NCBI Gene Model | MGI Sequence Detail	5353	C57BL/6J
transcript	AK016162	GenBank | ENA | DDBJ | MGI Sequence Detail	1251	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 13

  Phenotypes 4
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm15886:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr30989	Chr3:103679226-103679234 (+)	41 bp
Tssr30990	Chr3:103679242-103679254 (+)	59 bp
Tssr30991	Chr3:103681487-103681499 (+)	2,304 bp
Tssr30992	Chr3:103681502-103681513 (+)	2,319 bp