Gm16105 Gene Detail

Summary

• Symbol
  Gm16105
• Name
  predicted gene 16105

• Feature Type
  lncRNA gene
• IDs
  MGI:3801737
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:81296993-81298806 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 39.72 cM

Strain
Comparison

• SNPs within 2kb
  92 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3801737	lncRNA gene	Chr10:81296993-81298806 (+)
129S1/SvImJ	ENSMUSG00200050944	lncRNA gene	Chr10:77924137-77925950 (+)
A/J	ENSMUSG00195050028	lncRNA gene	Chr10:78319419-78321232 (+)
AKR/J	ENSMUSG00220049892	lncRNA gene	Chr10:77917090-77918903 (+)
BALB/cJ	ENSMUSG00180053275	lncRNA gene	Chr10:78329865-78331678 (+)
C3H/HeJ	ENSMUSG00175052528	lncRNA gene	Chr10:78200610-78202423 (+)
C57BL/6NJ	ENSMUSG00215053541	lncRNA gene	Chr10:77942495-77944308 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002532	antisense lncRNA gene	Chr10:75464683-75466549 (+)
CAST/EiJ	ENSTCUG00005052020	lncRNA gene	Chr10:77825127-77826932 (+)
CBA/J	ENSMUSG00210050083	lncRNA gene	Chr10:78056648-78058461 (+)
DBA/2J	ENSMUSG00185053599	lncRNA gene	Chr10:78399079-78400892 (+)
FVB/NJ	ENSMUSG00205051199	lncRNA gene	Chr10:78111897-78113711 (+)
JF1/MsJ	ENSUMUG00000055831	lncRNA gene	Chr10:79627532-79629337 (+)
LP/J	ENSMUSG00230051121	lncRNA gene	Chr10:80168655-80170468 (+)
NOD/ShiLtJ	ENSMUSG00190052732	lncRNA gene	Chr10:78312762-78314575 (+)
NZO/HlLtJ	ENSMUSG00225053338	lncRNA gene	Chr10:84455216-84457029 (+)
PWK/PhJ	ENSLUMG00010052065	lncRNA gene	Chr10:77990587-77992388 (+)
SPRET/EiJ	ENSMSPG00010048226	lncRNA gene	Chr10:79601505-79603317 (+)
WSB/EiJ	ENSIUOG00005051716	lncRNA gene	Chr10:78053221-78055035 (+)

Homology

• Gene Tree
  Gm16105
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm16105
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000084849 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084849	Ensembl Gene Model | MGI Sequence Detail	1814	C57BL/6J
transcript	ENSMUST00000156926	Ensembl | MGI Sequence Detail	697	Not Applicable

References

• Summaries
  All 10

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Gm16105:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr94769	Chr10:81297399-81297401 (+)	407 bp