Rnu4atac Gene Detail

Summary

• Symbol
  Rnu4atac
• Name
  RNA, U4atac small nuclear (U12-dependent splicing)
• Synonyms
  Gm22710, U4atac

• Feature Type
  snRNA gene
• IDs
  MGI:3799640
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:118386871-118386995 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  94 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3799640	snRNA gene	Chr1:118386871-118386995 (-)
129S1/SvImJ	ENSMUSG00200001783	snRNA gene	Chr1:115859799-115859923 (-)
A/J	ENSMUSG00195004657	snRNA gene	Chr1:115102174-115102298 (-)
AKR/J	ENSMUSG00220025079	snRNA gene	Chr1:114917562-114917686 (-)
BALB/cJ	ENSMUSG00180012771	snRNA gene	Chr1:115509473-115509597 (-)
C3H/HeJ	ENSMUSG00175019529	snRNA gene	Chr1:115333210-115333334 (-)
C57BL/6NJ	ENSMUSG00215013279	snRNA gene	Chr1:115293400-115293524 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034699	snRNA gene	Chr1:110506497-110506620 (-)
CAST/EiJ	ENSTCUG00005006509	snRNA gene	Chr1:114243675-114243799 (-)
CBA/J	ENSMUSG00210001325	snRNA gene	Chr1:115162846-115162970 (-)
DBA/2J	ENSMUSG00185013643	snRNA gene	Chr1:119610684-119610808 (-)
FVB/NJ	ENSMUSG00205012330	snRNA gene	Chr1:114660170-114660294 (-)
JF1/MsJ	ENSUMUG00000030411	snRNA gene	Chr1:118705552-118705676 (-)
LP/J	ENSMUSG00230009121	snRNA gene	Chr1:119037739-119037863 (-)
NOD/ShiLtJ	ENSMUSG00190006560	snRNA gene	Chr1:115140960-115141084 (-)
NZO/HlLtJ	ENSMUSG00225002892	snRNA gene	Chr1:122829792-122829916 (-)
PWK/PhJ	ENSLUMG00010014729	snRNA gene	Chr1:114296685-114296809 (-)
SPRET/EiJ	ENSMSPG00010016742	snRNA gene	Chr1:116929691-116929815 (-)
WSB/EiJ	ENSIUOG00005003007	snRNA gene	Chr1:115008160-115008284 (-)

Homology

• Gene Tree
  Rnu4atac
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  3
• Endonuclease-mediated
  3
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  647
• Tissues
  30
• cDNA Data
  1
• Literature Summary
  3

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000080542 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000080542	Ensembl Gene Model | MGI Sequence Detail	125	C57BL/6J
transcript	ENSMUST00000116892	Ensembl | MGI Sequence Detail	125	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:5452487

References

• Summaries
  All 8

  Developmental Gene Expression 3

  Phenotypes 1
• Earliest
  J:137509 Pessa HK, et al., The abundance of the spliceosomal snRNPs is not limiting the splicing of U12-type introns. RNA. 2006 Oct;12(10):1883-92
• Latest
  J:319558 Bizen N, et al., Ddx20, an Olig2 binding factor, governs the survival of neural and oligodendrocyte progenitor cells via proper Mdm2 splicing and p53 suppression. Cell Death Differ. 2022;

TSS for Rnu4atac:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr13193	Chr1:118386993-118386997 (-)	0 bp