Gm15854 Pseudogene Detail

Summary

• Symbol
  Gm15854
• Name
  predicted gene 15854

• Feature Type
  pseudogene
• IDs
  MGI:3783238
  NCBI Gene: 667764
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr6:129949343-129969807 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 63.44 cM

Strain
Comparison

• SNPs within 2kb
  1334 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3783238	pseudogene	Chr6:129949343-129969807 (-)
129S1/SvImJ	no annotation
A/J	ENSMUSG00195034114	pseudogene	Chr6:126379325-126418075 (-)
AKR/J	no annotation
BALB/cJ	ENSMUSG00180041202	pseudogene	Chr6:126716228-126754972 (-)
C3H/HeJ	ENSMUSG00175039794	pseudogene	Chr6:126396400-126435146 (-)
C57BL/6NJ	ENSMUSG00215035297	pseudogene	Chr6:126779662-126800124 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005042010	pseudogene	Chr6:126756879-126775292 (-)
CBA/J	ENSMUSG00210016707	pseudogene	Chr6:126416201-126454323 (-)
DBA/2J	ENSMUSG00185043466	pseudogene	Chr6:127114651-127153397 (-)
FVB/NJ	ENSMUSG00205043714	pseudogene	Chr6:126042538-126042806 (-)
JF1/MsJ	ENSUMUG00000046933	pseudogene	Chr6:125796976-125812713 (-)
LP/J	ENSMUSG00230045795	pseudogene	Chr6:128364150-128379868 (-)
NOD/ShiLtJ	ENSMUSG00190041208	pseudogene	Chr6:126190578-126207944 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010044598	pseudogene	Chr6:124946738-124962451 (-)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005046810	pseudogene	Chr6:126908924-126927278 (-)

Homology

• Gene Tree
  Gm15854
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000083120 (Evidence)
• NCBI Gene
  667764

Representative Sequences			Length	Strain/Species
genomic	667764	NCBI Gene Model | MGI Sequence Detail	20465	C57BL/6J

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;