Gm15788 Gene Detail

Summary

• Symbol
  Gm15788
• Name
  predicted gene 15788

• Feature Type
  lncRNA gene
• IDs
  MGI:3783230
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:110410027-110425133 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 53.43 cM

Strain
Comparison

• SNPs within 2kb
  513 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3783230	lncRNA gene	Chr5:110410027-110425133 (+)
129S1/SvImJ	ENSMUSG00200024129	lncRNA gene	Chr5:104173200-104188693 (+)
A/J	ENSMUSG00195041220	lncRNA gene	Chr5:103655209-103670469 (+)
AKR/J	ENSMUSG00220052169	lncRNA gene	Chr5:103185578-103201071 (+)
BALB/cJ	ENSMUSG00180047201	lncRNA gene	Chr5:103806944-103822207 (+)
C3H/HeJ	ENSMUSG00175047551	lncRNA gene	Chr5:105792172-105807316 (+)
C57BL/6NJ	ENSMUSG00215036593	lncRNA gene	Chr5:103807248-103822355 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003728	antisense lncRNA gene	Chr5:103177936-103181481 (+)
CAST/EiJ	ENSTCUG00005033579	lncRNA gene	Chr5:102987990-103003085 (+)
CBA/J	ENSMUSG00210047654	lncRNA gene	Chr5:104544319-104559463 (+)
DBA/2J	ENSMUSG00185048624	lncRNA gene	Chr5:107569592-107585015 (+)
FVB/NJ	ENSMUSG00205053321	lncRNA gene	Chr5:103444111-103459255 (+)
JF1/MsJ	ENSUMUG00000018160	lncRNA gene	Chr5:110418299-110434066 (+)
LP/J	ENSMUSG00230049851	lncRNA gene	Chr5:111711673-111727166 (+)
NOD/ShiLtJ	ENSMUSG00190050678	lncRNA gene	Chr5:103480651-103496102 (+)
NZO/HlLtJ	ENSMUSG00225026052	lncRNA gene	Chr5:119333527-119349020 (+)
PWK/PhJ	ENSLUMG00010038879	lncRNA gene	Chr5:102334738-102350214 (+)
SPRET/EiJ	ENSMSPG00010046112	lncRNA gene	Chr5:105580194-105595621 (+)
WSB/EiJ	ENSIUOG00005045253	lncRNA gene	Chr5:106184373-106199672 (+)

Homology

• Gene Tree
  Gm15788
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  1
• Gene trapped
  4
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm15788
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000087439 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087439	Ensembl Gene Model | MGI Sequence Detail	15107	C57BL/6J
transcript	ENSMUST00000140087	Ensembl | MGI Sequence Detail	751	Not Applicable

References

• Summaries
  All 10

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm15788:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr47884	Chr5:110409340-110409345 (+)	-684 bp