Gm15779 Pseudogene Detail

Summary

• Symbol
  Gm15779
• Name
  predicted gene 15779
• Synonyms
  EG667138

• Feature Type
  pseudogene
• IDs
  MGI:3783221
  NCBI Gene: 108169179
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr6:148905413-148905824 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 78.72 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  80 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3783221	pseudogene	Chr6:148905395-148905860 (+)
129S1/SvImJ	ENSMUSG00200003771	pseudogene	Chr6:146431766-146432177 (+)
A/J	ENSMUSG00195003813	pseudogene	Chr6:145338396-145338807 (+)
AKR/J	ENSMUSG00220012790	pseudogene	Chr6:143604581-143604992 (+)
BALB/cJ	ENSMUSG00180002583	pseudogene	Chr6:145465445-145465856 (+)
C3H/HeJ	ENSMUSG00175002504	pseudogene	Chr6:145396004-145396415 (+)
C57BL/6NJ	ENSMUSG00215003788	pseudogene	Chr6:145562843-145563254 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012090	pseudogene	Chr6:146720478-146720882 (+)
CAST/EiJ	ENSTCUG00005011084	pseudogene	Chr6:146206008-146206419 (+)
CBA/J	ENSMUSG00210005357	pseudogene	Chr6:145473776-145474187 (+)
DBA/2J	ENSMUSG00185016156	pseudogene	Chr6:146097983-146098394 (+)
FVB/NJ	ENSMUSG00205000080	pseudogene	Chr6:144446500-144446911 (+)
JF1/MsJ	ENSUMUG00000014947	pseudogene	Chr6:144745272-144745683 (+)
LP/J	ENSMUSG00230005638	pseudogene	Chr6:147205163-147205574 (+)
NOD/ShiLtJ	ENSMUSG00190002521	pseudogene	Chr6:145948993-145949404 (+)
NZO/HlLtJ	ENSMUSG00225013758	pseudogene	Chr6:150107520-150107931 (+)
PWK/PhJ	ENSLUMG00010002430	pseudogene	Chr6:143824221-143824632 (+)
SPRET/EiJ	ENSMSPG00010016927	pseudogene	Chr6:147786259-147786670 (+)
WSB/EiJ	ENSIUOG00005005025	pseudogene	Chr6:146174750-146175161 (+)

Homology

• Gene Tree
  Gm15779
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000082633 (Evidence)
• NCBI Gene
  108169179

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082633	Ensembl Gene Model | MGI Sequence Detail	412	C57BL/6J
transcript	ENSMUST00000117470	Ensembl | MGI Sequence Detail	412	Not Applicable

Other
Accession IDs

MGI:3644676

References

• Summaries
  All 9

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9