Gm15739 Pseudogene Detail

Summary

• Symbol
  Gm15739
• Name
  predicted gene 15739

• Feature Type
  pseudogene
• IDs
  MGI:3783181
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:146185361-146186232 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 85.20 cM

Strain
Comparison

• SNPs within 2kb
  20 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3783181	pseudogene	Chr5:146185361-146186232 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013320	pseudogene	Chr5:151811680-151812551 (+)
A/J	MGP_AJ_G0013302	pseudogene	Chr5:145398730-145399601 (+)
AKR/J	MGP_AKRJ_G0013264	pseudogene	Chr5:149825746-149826617 (+)
BALB/cJ	MGP_BALBcJ_G0013280	pseudogene	Chr5:146606787-146607658 (+)
C3H/HeJ	MGP_C3HHeJ_G0013127	pseudogene	Chr5:150775558-150776429 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013648	pseudogene	Chr5:157387579-157388450 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0012847	pseudogene	Chr5:150281813-150282682 (+)
CBA/J	MGP_CBAJ_G0013096	pseudogene	Chr5:163916548-163917419 (+)
DBA/2J	MGP_DBA2J_G0013180	pseudogene	Chr5:145060812-145061683 (+)
FVB/NJ	MGP_FVBNJ_G0013178	pseudogene	Chr5:144271464-144272335 (+)
LP/J	MGP_LPJ_G0013250	pseudogene	Chr5:152492155-152493026 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013197	pseudogene	Chr5:166279846-166280717 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013651	pseudogene	Chr5:149740885-149741756 (+)
PWK/PhJ	MGP_PWKPhJ_G0012661	pseudogene	Chr5:144146383-144147354 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012447	pseudogene	Chr5:146991162-146992033 (+)
WSB/EiJ	MGP_WSBEiJ_G0012888	pseudogene	Chr5:150545534-150546405 (+)

Homology

• Gene Tree
  Gm15739
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000080957 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000080957	Ensembl Gene Model | MGI Sequence Detail	872	C57BL/6J
transcript	ENSMUST00000118049	Ensembl | MGI Sequence Detail	872	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;