Gm15730 Pseudogene Detail

Summary

• Symbol
  Gm15730
• Name
  predicted gene 15730
• Synonyms
  EG433840

• Feature Type
  pseudogene
• IDs
  MGI:3783173
  NCBI Gene: 108169022
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:8105139-8105553 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 3.38 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  11 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3783173	pseudogene	Chr5:8105085-8105579 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012962	pseudogene	Chr5:5017733-5018147 (+)
A/J	MGP_AJ_G0012949	pseudogene	Chr5:4857042-4857563 (+)
AKR/J	MGP_AKRJ_G0012916	pseudogene	Chr5:4978589-4979003 (+)
BALB/cJ	MGP_BALBcJ_G0012928	pseudogene	Chr5:5076008-5076422 (+)
C3H/HeJ	MGP_C3HHeJ_G0012779	pseudogene	Chr5:5180702-5181116 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013287	pseudogene	Chr5:5502631-5503045 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011497	pseudogene	Chr5:4687520-4687930 (+)
CAST/EiJ	MGP_CASTEiJ_G0012517	pseudogene	Chr5:5051183-5051593 (+)
CBA/J	MGP_CBAJ_G0012750	pseudogene	Chr5:5626689-5627103 (+)
DBA/2J	MGP_DBA2J_G0012824	pseudogene	Chr5:4988881-4989295 (+)
FVB/NJ	MGP_FVBNJ_G0012826	pseudogene	Chr5:4782870-4783284 (+)
LP/J	MGP_LPJ_G0012893	pseudogene	Chr5:5143240-5143654 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012840	pseudogene	Chr5:5620054-5620464 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013284	pseudogene	Chr5:4999014-4999428 (+)
PWK/PhJ	MGP_PWKPhJ_G0012334	pseudogene	Chr5:4790539-4791065 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012148	pseudogene	Chr5:5185568-5185978 (+)
WSB/EiJ	MGP_WSBEiJ_G0012551	pseudogene	Chr5:4989641-4990055 (+)

Homology

• Gene Tree
  Gm15730
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000082867 (Evidence)
• NCBI Gene
  108169022

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082867	Ensembl Gene Model | MGI Sequence Detail	415	C57BL/6J
transcript	ENSMUST00000121828	Ensembl | MGI Sequence Detail	415	Not Applicable

Other
Accession IDs

MGI:3643166

References

• Summaries
  All 6
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm15730:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr45106	Chr5:8105085-8105114 (+)	-39 bp