Sox5os4 Gene Detail

Summary

• Symbol
  Sox5os4
• Name
  SRY (sex determining region Y)-box 5, opposite strand 4
• Synonyms
  Gm15686

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:3783128
  NCBI Gene: 102633928
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:144705027-144705797 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 77.03 cM

Strain
Comparison

• SNPs within 2kb
  23 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3783128	antisense lncRNA gene	Chr6:144666637-144705797 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004389	antisense lncRNA gene	Chr6:149670146-149710010 (+)
A/J	MGP_AJ_G0004366	antisense lncRNA gene	Chr6:143758604-143797399 (+)
AKR/J	MGP_AKRJ_G0004348	antisense lncRNA gene	Chr6:148046912-148085770 (+)
BALB/cJ	MGP_BALBcJ_G0004352	antisense lncRNA gene	Chr6:143519473-143558823 (+)
C3H/HeJ	MGP_C3HHeJ_G0004301	antisense lncRNA gene	Chr6:148065018-148104862 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004502	antisense lncRNA gene	Chr6:153707865-153749486 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003962	antisense lncRNA gene	Chr6:142514278-142554316 (+)
CAST/EiJ	MGP_CASTEiJ_G0004261	antisense lncRNA gene	Chr6:147678684-147719628 (+)
CBA/J	MGP_CBAJ_G0004295	antisense lncRNA gene	Chr6:159563136-159607608 (+)
DBA/2J	MGP_DBA2J_G0004310	antisense lncRNA gene	Chr6:142558922-142598636 (+)
FVB/NJ	MGP_FVBNJ_G0004327	antisense lncRNA gene	Chr6:141300847-141339643 (+)
LP/J	MGP_LPJ_G0004389	antisense lncRNA gene	Chr6:149766498-149808638 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004318	antisense lncRNA gene	Chr6:163383162-163423279 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004499	antisense lncRNA gene	Chr6:147875685-147917131 (+)
PWK/PhJ	MGP_PWKPhJ_G0004214	antisense lncRNA gene	Chr6:141061292-141100618 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004156	antisense lncRNA gene	Chr6:146024275-146067667 (+)
WSB/EiJ	MGP_WSBEiJ_G0004300	antisense lncRNA gene	Chr6:148460196-148501274 (+)

Homology

• Gene Tree
  Sox5os4
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000086282 (Evidence)
• NCBI Gene
  102633928

Representative Sequences			Length	Strain/Species
genomic	102633928	NCBI Gene Model | MGI Sequence Detail	771	C57BL/6J
transcript	XR_378133	RefSeq | MGI Sequence Detail	664	C57BL/6J

References

• Summaries
  All 6
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;