Gm15679 Gene Detail

Summary

• Symbol
  Gm15679
• Name
  predicted gene 15679

• Feature Type
  lncRNA gene
• IDs
  MGI:3783121
  NCBI Gene: 100873092
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr8:99738518-99759372 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 49.39 cM

Strain
Comparison

• SNPs within 2kb
  125 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3783121	lncRNA gene	Chr8:99733759-99759372 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004575	antisense lncRNA gene	Chr8:100680576-100701368 (+)
A/J	MGP_AJ_G0004555	antisense lncRNA gene	Chr8:96734649-96755437 (+)
AKR/J	MGP_AKRJ_G0004539	antisense lncRNA gene	Chr8:99390922-99412067 (+)
BALB/cJ	MGP_BALBcJ_G0004540	antisense lncRNA gene	Chr8:96830947-96854679 (+)
C3H/HeJ	MGP_C3HHeJ_G0004489	antisense lncRNA gene	Chr8:100175231-100198391 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004689	antisense lncRNA gene	Chr8:104359170-104381646 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004140	antisense lncRNA gene	Chr8:90461441-90488052 (+)
CAST/EiJ	MGP_CASTEiJ_G0004448	antisense lncRNA gene	Chr8:99680626-99701758 (+)
CBA/J	MGP_CBAJ_G0004483	antisense lncRNA gene	Chr8:107884978-107910891 (+)
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0004515	antisense lncRNA gene	Chr8:95102554-95123667 (+)
LP/J	MGP_LPJ_G0004579	antisense lncRNA gene	Chr8:100788458-100810295 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004504	antisense lncRNA gene	Chr8:110396214-110419558 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004689	antisense lncRNA gene	Chr8:99567444-99590246 (+)
PWK/PhJ	MGP_PWKPhJ_G0004400	antisense lncRNA gene	Chr8:95605966-95628659 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004341	antisense lncRNA gene	Chr8:98403083-98423678 (+)
WSB/EiJ	MGP_WSBEiJ_G0004488	antisense lncRNA gene	Chr8:100066612-100089886 (+)

Homology

• Gene Tree
  Gm15679
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000089819 (Evidence)
• NCBI Gene
  100873092

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089819	Ensembl Gene Model | MGI Sequence Detail	20855	C57BL/6J
transcript	ENSMUST00000161244	Ensembl | MGI Sequence Detail	1936	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 8
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;