Gm15663 Gene Detail

Summary

• Symbol
  Gm15663
• Name
  predicted gene 15663

• Feature Type
  lncRNA gene
• IDs
  MGI:3783105
  NCBI Gene: 327812
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr10:105410412-105419731 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 55.10 cM

Strain
Comparison

• SNPs within 2kb
  361 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3783105	lncRNA gene	Chr10:105380635-105466166 (+)
129S1/SvImJ	ENSMUSG00200020199	lncRNA gene	Chr10:101791641-101848088 (+)
A/J	ENSMUSG00195016318	lncRNA gene	Chr10:102237302-102289814 (+)
AKR/J	ENSMUSG00220025573	lncRNA gene	Chr10:101811009-101867460 (+)
BALB/cJ	ENSMUSG00180009405	lncRNA gene	Chr10:102244079-102296597 (+)
C3H/HeJ	ENSMUSG00175006032	lncRNA gene	Chr10:102177342-102233795 (+)
C57BL/6NJ	ENSMUSG00215008681	lncRNA gene	Chr10:101879502-101935978 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013279	unclassified non-coding RNA gene	Chr10:98717463-98727307 (+)
CAST/EiJ	ENSTCUG00005006102	lncRNA gene	Chr10:101385057-101444128 (+)
CBA/J	ENSMUSG00210022838	lncRNA gene	Chr10:102068211-102124669 (+)
DBA/2J	ENSMUSG00185018997	lncRNA gene	Chr10:102186424-102238905 (+)
FVB/NJ	ENSMUSG00205003699	lncRNA gene	Chr10:101681242-101737714 (+)
JF1/MsJ	ENSUMUG00000011522	lncRNA gene	Chr10:103600229-103652770 (+)
LP/J	ENSMUSG00230013440	lncRNA gene	Chr10:104156842-104213288 (+)
NOD/ShiLtJ	ENSMUSG00190025268	lncRNA gene	Chr10:102290287-102346727 (+)
NZO/HlLtJ	ENSMUSG00225041125	lncRNA gene	Chr10:108408814-108465262 (+)
PWK/PhJ	ENSLUMG00010006007	lncRNA gene	Chr10:101862313-101914118 (+)
SPRET/EiJ	ENSMSPG00010005829	lncRNA gene	Chr10:103740687-103794866 (+)
WSB/EiJ	ENSIUOG00005013506	lncRNA gene	Chr10:101966354-102022220 (+)

Homology

• Gene Tree
  Gm15663
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm15663
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  44
• RefSeq
  1

• Ensembl
  ENSMUSG00000085282 (Evidence)
• NCBI Gene
  327812

Representative Sequences			Length	Strain/Species
genomic	327812	NCBI Gene Model | MGI Sequence Detail	9320	C57BL/6J
transcript	NR_038032	RefSeq | MGI Sequence Detail	3204	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 3

References

• Summaries
  All 15

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Gm15663:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr95616	Chr10:105409017-105409028 (+)	-1,389 bp
Tssr95617	Chr10:105409135-105409138 (+)	-1,275 bp
Tssr95618	Chr10:105410399-105410427 (+)	1 bp