Gm15663 Gene Detail

Summary

• Symbol
  Gm15663
• Name
  predicted gene 15663

• Feature Type
  lncRNA gene
• IDs
  MGI:3783105
  NCBI Gene: 327812
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr10:105410412-105419731 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 55.10 cM

Strain
Comparison

• SNPs within 2kb
  133 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3783105	lncRNA gene	Chr10:105409814-105466166 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015140	unclassified non-coding RNA gene	Chr10:107676336-107686254 (+)
A/J	MGP_AJ_G0015114	unclassified non-coding RNA gene	Chr10:103678180-103688139 (+)
AKR/J	MGP_AKRJ_G0015077	unclassified non-coding RNA gene	Chr10:106706674-106716600 (+)
BALB/cJ	MGP_BALBcJ_G0015077	unclassified non-coding RNA gene	Chr10:104071292-104081247 (+)
C3H/HeJ	MGP_C3HHeJ_G0014900	unclassified non-coding RNA gene	Chr10:106740620-106750538 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015533	unclassified non-coding RNA gene	Chr10:111429675-111439596 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013279	unclassified non-coding RNA gene	Chr10:98717463-98727307 (+)
CAST/EiJ	MGP_CASTEiJ_G0014454	unclassified non-coding RNA gene	Chr10:106862732-106871925 (+)
CBA/J	MGP_CBAJ_G0014879	unclassified non-coding RNA gene	Chr10:115730082-115740000 (+)
DBA/2J	MGP_DBA2J_G0014972	unclassified non-coding RNA gene	Chr10:102785645-102795808 (+)
FVB/NJ	MGP_FVBNJ_G0014983	unclassified non-coding RNA gene	Chr10:101867024-101876936 (+)
LP/J	MGP_LPJ_G0015054	unclassified non-coding RNA gene	Chr10:108304977-108314895 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015010	unclassified non-coding RNA gene	Chr10:118024798-118034445 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015572	unclassified non-coding RNA gene	Chr10:106668353-106678272 (+)
PWK/PhJ	MGP_PWKPhJ_G0014246	unclassified non-coding RNA gene	Chr10:102862299-102872518 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014034	unclassified non-coding RNA gene	Chr10:105422072-105432072 (+)
WSB/EiJ	MGP_WSBEiJ_G0014557	unclassified non-coding RNA gene	Chr10:106779832-106789719 (+)

Homology

• Gene Tree
  Gm15663
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm15663
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  1

• Ensembl
  ENSMUSG00000085282 (Evidence)
• NCBI Gene
  327812

Representative Sequences			Length	Strain/Species
genomic	327812	NCBI Gene Model | MGI Sequence Detail	9320	C57BL/6J
transcript	NR_038032	RefSeq | MGI Sequence Detail	3204	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 3

References

• Summaries
  All 15

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Gm15663:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr95616	Chr10:105409017-105409028 (+)	-1,389 bp
Tssr95617	Chr10:105409135-105409138 (+)	-1,275 bp
Tssr95618	Chr10:105410399-105410427 (+)	1 bp