Gm15565 Pseudogene Detail

Summary

• Symbol
  Gm15565
• Name
  predicted gene 15565

• Feature Type
  pseudogene
• IDs
  MGI:3783014
  NCBI Gene: 108167689
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:120213977-120214403 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 71.57 cM

Strain
Comparison

• SNPs within 2kb
  43 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3783014	pseudogene	Chr9:120210008-120215005 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014263	pseudogene	Chr9:123231920-123232346 (+)
A/J	MGP_AJ_G0014279	pseudogene	Chr9:118602794-118603220 (+)
AKR/J	MGP_AKRJ_G0014204	pseudogene	Chr9:121713535-121713961 (+)
BALB/cJ	MGP_BALBcJ_G0014229	pseudogene	Chr9:118501271-118501697 (+)
C3H/HeJ	MGP_C3HHeJ_G0014060	pseudogene	Chr9:122190452-122190878 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014683	pseudogene	Chr9:126591181-126591607 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012491	pseudogene	Chr9:115791477-115791902 (+)
CAST/EiJ	MGP_CASTEiJ_G0013712	pseudogene	Chr9:122219559-122219985 (+)
CBA/J	MGP_CBAJ_G0014042	pseudogene	Chr9:131287454-131287880 (+)
DBA/2J	MGP_DBA2J_G0014126	pseudogene	Chr9:118059913-118060339 (+)
FVB/NJ	MGP_FVBNJ_G0014125	pseudogene	Chr9:116945236-116945662 (+)
LP/J	MGP_LPJ_G0014217	pseudogene	Chr9:123574625-123575051 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014159	pseudogene	Chr9:132248293-132248719 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014652	pseudogene	Chr9:122125027-122125453 (+)
PWK/PhJ	MGP_PWKPhJ_G0013527	pseudogene	Chr9:118499449-118499875 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013318	pseudogene	Chr9:122214800-122215227 (+)
WSB/EiJ	MGP_WSBEiJ_G0013774	pseudogene	Chr9:122003361-122003787 (+)

Homology

• Gene Tree
  Gm15565
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000082356 (Evidence)
• NCBI Gene
  108167689

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082356	Ensembl Gene Model | MGI Sequence Detail	427	C57BL/6J
transcript	ENSMUST00000118890	Ensembl | MGI Sequence Detail	427	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm15565:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr87733	Chr9:120213916-120213923 (+)	-57 bp