Gm15562 Gene Detail

Summary

• Symbol
  Gm15562
• Name
  predicted gene 15562

• Feature Type
  lncRNA gene
• IDs
  MGI:3783011
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr14:47198897-47203141 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 24.55 cM

Strain
Comparison

• SNPs within 2kb
  42 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3783011	lncRNA gene	Chr14:47198897-47203141 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0036910	sense intronic lncRNA gene	Chr14:40669940-40676952 (+)
A/J	MGP_AJ_G0036898	sense intronic lncRNA gene	Chr14:39449852-39453987 (+)
AKR/J	MGP_AKRJ_G0036845	sense intronic lncRNA gene	Chr14:40977108-40982606 (+)
BALB/cJ	MGP_BALBcJ_G0036889	sense intronic lncRNA gene	Chr14:39501358-39505007 (+)
C3H/HeJ	MGP_C3HHeJ_G0036574	sense intronic lncRNA gene	Chr14:40767374-40772396 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0037402	sense intronic lncRNA gene	Chr14:42417495-42426608 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034462	sense intronic lncRNA gene	Chr14:38809409-38813096 (+)
CAST/EiJ	MGP_CASTEiJ_G0035763	sense intronic lncRNA gene	Chr14:37895859-37901449 (+)
CBA/J	MGP_CBAJ_G0036549	sense intronic lncRNA gene	Chr14:43747809-43760601 (+)
DBA/2J	MGP_DBA2J_G0036726	sense intronic lncRNA gene	Chr14:39345818-39350573 (+)
FVB/NJ	MGP_FVBNJ_G0036677	sense intronic lncRNA gene	Chr14:39077558-39081294 (+)
LP/J	MGP_LPJ_G0036772	sense intronic lncRNA gene	Chr14:40954373-40958468 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036683	sense intronic lncRNA gene	Chr14:43117686-43121483 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037518	sense intronic lncRNA gene	Chr14:40525810-40535831 (+)
PWK/PhJ	MGP_PWKPhJ_G0035457	sense intronic lncRNA gene	Chr14:36220607-36224132 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0035268	sense intronic lncRNA gene	Chr14:36641723-36645248 (+)
WSB/EiJ	MGP_WSBEiJ_G0035963	sense intronic lncRNA gene	Chr14:40636975-40642427 (+)

Homology

• Gene Tree
  Gm15562
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm15562
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000089870 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089870	Ensembl Gene Model | MGI Sequence Detail	4245	C57BL/6J
transcript	ENSMUST00000161397	Ensembl | MGI Sequence Detail	426	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;