Gm15559 Gene Detail

Summary

• Symbol
  Gm15559
• Name
  predicted gene 15559

• Feature Type
  lncRNA gene
• IDs
  MGI:3783008
  NCBI Gene: 100504049
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:110918815-110927126 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 53.70 cM

Strain
Comparison

• SNPs within 2kb
  217 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3783008	lncRNA gene	Chr5:110918246-110927827 (+)
129S1/SvImJ	ENSMUSG00200024210	lncRNA gene	Chr5:104686381-104694684 (+)
A/J	ENSMUSG00195039630	lncRNA gene	Chr5:104169149-104177454 (+)
AKR/J	ENSMUSG00220051898	lncRNA gene	Chr5:103688990-103697310 (+)
BALB/cJ	ENSMUSG00180046780	lncRNA gene	Chr5:104320893-104329197 (+)
C3H/HeJ	ENSMUSG00175050012	lncRNA gene	Chr5:106306898-106315205 (+)
C57BL/6NJ	ENSMUSG00215034917	lncRNA gene	Chr5:104316332-104324640 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003731	antisense lncRNA gene	Chr5:103696411-103704767 (+)
CAST/EiJ	ENSTCUG00005031816	lncRNA gene	Chr5:103500501-103508841 (+)
CBA/J	ENSMUSG00210047489	lncRNA gene	Chr5:105059044-105067351 (+)
DBA/2J	ENSMUSG00185050455	lncRNA gene	Chr5:108086051-108094355 (+)
FVB/NJ	ENSMUSG00205053065	lncRNA gene	Chr5:103958582-103966886 (+)
JF1/MsJ	ENSUMUG00000018291	lncRNA gene	Chr5:110936684-110945102 (+)
LP/J	ENSMUSG00230049856	lncRNA gene	Chr5:112224847-112233150 (+)
NOD/ShiLtJ	ENSMUSG00190050852	lncRNA gene	Chr5:103994760-104003064 (+)
NZO/HlLtJ	ENSMUSG00225026056	lncRNA gene	Chr5:119846697-119855000 (+)
PWK/PhJ	ENSLUMG00010039310	lncRNA gene	Chr5:102843345-102851791 (+)
SPRET/EiJ	ENSMSPG00010047942	lncRNA gene	Chr5:106093091-106101354 (+)
WSB/EiJ	ENSIUOG00005046401	lncRNA gene	Chr5:106698340-106706644 (+)

Homology

• Gene Tree
  Gm15559
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm15559
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  8

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1

• Ensembl
  ENSMUSG00000086401 (Evidence)
• NCBI Gene
  100504049

Representative Sequences			Length	Strain/Species
genomic	100504049	NCBI Gene Model | MGI Sequence Detail	8312	C57BL/6J
transcript	NR_152254	RefSeq | MGI Sequence Detail	2260	ZRU/MplStud

Molecular
Reagents

• All nucleic 8

  cDNA 8

References

• Summaries
  All 16

  Phenotypes 7
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14