Gm15545 Gene Detail

Summary

• Symbol
  Gm15545
• Name
  predicted gene 15545

• Feature Type
  lncRNA gene
• IDs
  MGI:3782994
  NCBI Gene: 100502630
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:44636324-44644025 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 29.07 cM

Strain
Comparison

• SNPs within 2kb
  270 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3782994	lncRNA gene	Chr7:44636228-44644025 (+)
129S1/SvImJ	ENSMUSG00200033602	lncRNA gene	Chr7:32233010-32240758 (+)
A/J	ENSMUSG00195051487	lncRNA gene	Chr7:36261080-36268830 (+)
AKR/J	ENSMUSG00220009082	lncRNA gene	Chr7:30566046-30573796 (+)
BALB/cJ	ENSMUSG00180044039	lncRNA gene	Chr7:33136481-33144234 (+)
C3H/HeJ	ENSMUSG00175041377	lncRNA gene	Chr7:33668938-33676687 (+)
C57BL/6NJ	ENSMUSG00215045838	lncRNA gene	Chr7:32929090-32936800 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013789	unclassified non-coding RNA gene	Chr7:46922655-46929687 (+)
CAST/EiJ	ENSTCUG00005049062	lncRNA gene	Chr7:36645175-36652761 (+)
CBA/J	ENSMUSG00210050042	lncRNA gene	Chr7:34040298-34048050 (+)
DBA/2J	ENSMUSG00185049869	lncRNA gene	Chr7:37912924-37920672 (+)
FVB/NJ	ENSMUSG00205048002	lncRNA gene	Chr7:33584620-33592331 (+)
JF1/MsJ	ENSUMUG00000054820	lncRNA gene	Chr7:42400190-42407711 (+)
LP/J	ENSMUSG00230051873	lncRNA gene	Chr7:43341382-43349091 (+)
NOD/ShiLtJ	ENSMUSG00190050979	lncRNA gene	Chr7:33912368-33920078 (+)
NZO/HlLtJ	ENSMUSG00225018881	lncRNA gene	Chr7:41549975-41557682 (+)
PWK/PhJ	ENSLUMG00010049239	lncRNA gene	Chr7:32868448-32876382 (+)
SPRET/EiJ	ENSMSPG00010045105	lncRNA gene	Chr7:32644953-32652833 (+)
WSB/EiJ	ENSIUOG00005030200	lncRNA gene	Chr7:34456747-34464484 (+)

Homology

• Gene Tree
  Gm15545
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  34
• Gene trapped
  34
• Find Mice (IMSR)
  44 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  1

• Ensembl
  ENSMUSG00000087138 (Evidence)
• NCBI Gene
  100502630

Representative Sequences			Length	Strain/Species
genomic	100502630	NCBI Gene Model | MGI Sequence Detail	7702	C57BL/6J
transcript	NR_045266	RefSeq | MGI Sequence Detail	1090	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 15

  Phenotypes 6
• Earliest
  J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-Le-Grand). 1999 Jul;45(5):737-50
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm15545:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr66455	Chr7:44636305-44636369 (+)	13 bp